phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m9c_23723/05_2023/7m9c_23723_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m9c_23723/05_2023/7m9c_23723.map refinement.macro_cycles=10 scattering_table=electron resolution=4.2 write_initial_geo_file=False >& 7m9c.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m9c_23723/05_2023/7m9c_23723.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m9c_23723/05_2023/7m9c_23723.map 4.2
Refinement ran but no refined model file.