phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7n0k_24107/11_2022/7n0k_24107.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7n0k_24107/11_2022/7n0k_24107.map refinement.macro_cycles=10 scattering_table=electron resolution=3.5 write_initial_geo_file=False >& 7n0k.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7n0k_24107/11_2022/7n0k_24107.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7n0k_24107/11_2022/7n0k_24107.map 3.5
Refinement ran but no refined model file.