Statistics failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7n8n_24238/07_2023/7n8n_24238.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7n8n_24238/07_2023/7n8n_24238.map 3.89 Traceback (most recent call last): File "/net/marbles/raid1/dorothee/rerefine/cryoem/rerefine_script.py", line 473, in get_statistics logger = null_out()) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/phenix/phenix/programs/validation_cryoem.py", line 29, in get_model_stat geometry.show(log = logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/cctbx_project/mmtbx/model/statistics.py", line 306, in show res = self.result() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/cctbx_project/mmtbx/model/statistics.py", line 251, in result clash = self.clash(), File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/cctbx_project/mmtbx/model/statistics.py", line 179, in clash nuclear = self.model.is_neutron()) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/cctbx_project/mmtbx/validation/clashscore.py", line 139, in __init__ log=out) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/cctbx_project/mmtbx/validation/clashscore.py", line 667, in check_and_add_hydrogen output_fname="reduce_fail.pdb") File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5013/modules/cctbx_project/mmtbx/validation/clashscore.py", line 572, in check_and_report_reduce_failure "\n".join(fb_object.stderr_lines))) Sorry: Reduce crashed with command 'molprobity.reduce -quiet -trim -'. Dumping stdin to file 'reduce_fail.pdb'. Return code: -15 Dumping stderr: