phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7nap_24277/10_2023/7nap_24277.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7nap_24277/10_2023/7nap_24277.map refinement.macro_cycles=10 scattering_table=electron resolution=3.2 write_initial_geo_file=False >& 7nap.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7nap_24277/10_2023/7nap_24277.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7nap_24277/10_2023/7nap_24277.map 3.2
Refinement ran but no refined model file.