INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7o3c_12703/12_2022/7o3c_12703.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 7o3c_12703.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  More than 20 percent of the atoms are missing for CDL
  as compared to the Monomer Library

  More than 20 percent of the atoms are missing for CDL
  as compared to the Chemical Components

  Build ligand and use monomer library to name atoms : PC1
  Using monomer library entry PC1 as template

  There is a tetra-coordinated nitrogen in your input.  You may need to add
  charge to the nitrogen thus:

ATOM  48421    NPC1 g 302      69.386  89.186  97.848  1.00102.81           N+1


  Build ligand and use chemical components : FES

MoleculeClass :  S: 2 Fe: 2 (CHEMICAL COMPONENTS format)
	4 atoms
	4 bonds
	0 angles
	0 dihedrals
	0 rings
	0 chirals

  Mapped the ligand (FES) to the monomer library restraints
  

  Attempting to download Chemical Components file for CUA
  Running eLBOW on CUA.cif
Sorry: 
  eLBOW not suitable for metal clusters unless the --final_geometry option
  is used.