phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7onl_12997/03_2023/7onl_12997.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7onl_12997/03_2023/7onl_12997.map refinement.macro_cycles=10 scattering_table=electron resolution=3.9 write_initial_geo_file=False >& 7onl.txt failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7onl_12997/03_2023/7onl_12997.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7onl_12997/03_2023/7onl_12997.map 3.9 Refinement ran but no refined model file.