phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7oto_13063/05_2022/7oto_13063_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7oto_13063/05_2022/7oto_13063.map refinement.macro_cycles=10 scattering_table=electron resolution=3.4 write_initial_geo_file=False >& 7oto.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7oto_13063/05_2022/7oto_13063.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7oto_13063/05_2022/7oto_13063.map 3.4
Refinement ran but no refined model file.