INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7p7l_13239/11_2023/7p7l_13239.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 7p7l_13239.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Build ligand and use monomer library to name atoms : LFA
  Using monomer library entry LFA as template

  Build ligand and use chemical components : SF4

MoleculeClass :  S: 4 Fe: 4 (CHEMICAL COMPONENTS format)
	8 atoms
	12 bonds
	0 angles
	0 dihedrals
	0 rings
	0 chirals

  Mapped the ligand (SF4) to the monomer library restraints
  

  Build ligand and use monomer library to name atoms : FMN
  Using monomer library entry FMN as template
	Difficulties in the ring structures may lead to problems later

  More than 20 percent of the atoms are missing for UQ8
  as compared to the Monomer Library

  More than 20 percent of the atoms are missing for UQ8
  as compared to the Chemical Components

  Build ligand and use chemical components : FES

MoleculeClass :  S: 2 Fe: 2 (CHEMICAL COMPONENTS format)
	4 atoms
	4 bonds
	0 angles
	0 dihedrals
	0 rings
	0 chirals

  Mapped the ligand (FES) to the monomer library restraints
  

  Build ligand and use monomer library to name atoms : 3PE
  Using monomer library entry 3PE as template

  OUTPUT
  
    Writing model to 7p7l_13239.updated.pdb
Traceback (most recent call last):
  File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5144/build/../modules/elbow/elbow/command_line/ready_set.py", line 1117, in <module>
    run(args)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5144/build/../modules/elbow/elbow/command_line/ready_set.py", line 916, in run
    f.close()
IOError: [Errno 28] No space left on device