phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7pko_13474/05_2023/7pko_13474.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7pko_13474/05_2023/7pko_13474.map refinement.macro_cycles=10 scattering_table=electron resolution=3.9 write_initial_geo_file=False >& 7pko.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7pko_13474/05_2023/7pko_13474.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7pko_13474/05_2023/7pko_13474.map 3.9
Refinement ran but no refined model file.