phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbc_13886/11_2022/7qbc_13886_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbc_13886/11_2022/7qbc_13886.map refinement.macro_cycles=10 scattering_table=electron resolution=3.53 write_initial_geo_file=False >& 7qbc.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbc_13886/11_2022/7qbc_13886.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbc_13886/11_2022/7qbc_13886.map 3.53
Refinement ran but no refined model file.