phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbi_13887/11_2022/7qbi_13887_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbi_13887/11_2022/7qbi_13887.map refinement.macro_cycles=10 scattering_table=electron resolution=3.46 write_initial_geo_file=False >& 7qbi.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbi_13887/11_2022/7qbi_13887.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qbi_13887/11_2022/7qbi_13887.map 3.46
Refinement ran but no refined model file.