phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qkm_14047/11_2022/7qkm_14047.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qkm_14047/11_2022/7qkm_14047.map refinement.macro_cycles=10 scattering_table=electron resolution=2.66 write_initial_geo_file=False >& 7qkm.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qkm_14047/11_2022/7qkm_14047.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qkm_14047/11_2022/7qkm_14047.map 2.66
Refinement ran but no refined model file.