phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qsl_14133/10_2023/7qsl_14133_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qsl_14133/10_2023/7qsl_14133.map refinement.macro_cycles=10 scattering_table=electron resolution=2.76 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qsl_14133/10_2023/7qsl_14133_ligands.cif >& 7qsl.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qsl_14133/10_2023/7qsl_14133.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qsl_14133/10_2023/7qsl_14133.map 2.76
Refinement ran but no refined model file.