phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qtl_14144/03_2023/7qtl_14144_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qtl_14144/03_2023/7qtl_14144.map refinement.macro_cycles=10 scattering_table=electron resolution=2.48 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qtl_14144/03_2023/7qtl_14144_ligands.cif >& 7qtl.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qtl_14144/03_2023/7qtl_14144.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7qtl_14144/03_2023/7qtl_14144.map 2.48
Refinement ran but no refined model file.