phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1d_14239/11_2022/7r1d_14239.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1d_14239/11_2022/7r1d_14239.map refinement.macro_cycles=10 scattering_table=electron resolution=3.5 write_initial_geo_file=False >& 7r1d.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1d_14239/11_2022/7r1d_14239.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1d_14239/11_2022/7r1d_14239.map 3.5
Refinement ran but no refined model file.