phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1f_14240/03_2023/7r1f_14240_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1f_14240/03_2023/7r1f_14240.map refinement.macro_cycles=10 scattering_table=electron resolution=2.58 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1f_14240/03_2023/7r1f_14240_ligands.cif >& 7r1f.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1f_14240/03_2023/7r1f_14240.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7r1f_14240/03_2023/7r1f_14240.map 2.58
Refinement ran but no refined model file.