phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7scb_25032/05_2023/7scb_25032_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7scb_25032/05_2023/7scb_25032.map refinement.macro_cycles=10 scattering_table=electron resolution=2.5 write_initial_geo_file=False >& 7scb.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7scb_25032/05_2023/7scb_25032.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7scb_25032/05_2023/7scb_25032.map 2.5
Refinement ran but no refined model file.