phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7sgz_25121/10_2023/7sgz_25121_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7sgz_25121/10_2023/7sgz_25121.map refinement.macro_cycles=10 scattering_table=electron resolution=3.17 write_initial_geo_file=False >& 7sgz.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7sgz_25121/10_2023/7sgz_25121.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7sgz_25121/10_2023/7sgz_25121.map 3.17
Refinement ran but no refined model file.