phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7soe_25268/01_2022/7soe_25268.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7soe_25268/01_2022/7soe_25268.map refinement.macro_cycles=10 scattering_table=electron resolution=2.8 write_initial_geo_file=False >& 7soe.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7soe_25268/01_2022/7soe_25268.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7soe_25268/01_2022/7soe_25268.map 2.8
Refinement ran but no refined model file.