phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7td1_25820/03_2023/7td1_25820_trim_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7td1_25820/03_2023/7td1_25820.map refinement.macro_cycles=10 scattering_table=electron resolution=3.08 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7td1_25820/03_2023/7td1_25820_trim_ligands.cif >& 7td1.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7td1_25820/03_2023/7td1_25820.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7td1_25820/03_2023/7td1_25820.map 3.08
Refinement ran but no refined model file.