phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7the_25893/04_2023/7the_25893.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7the_25893/04_2023/7the_25893.map refinement.macro_cycles=10 scattering_table=electron resolution=3.87 write_initial_geo_file=False >& 7the.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7the_25893/04_2023/7the_25893.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7the_25893/04_2023/7the_25893.map 3.87
Refinement ran but no refined model file.