phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7vq5_32086/01_2022/7vq5_32086_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7vq5_32086/01_2022/7vq5_32086.map refinement.macro_cycles=10 scattering_table=electron resolution=3.1 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7vq5_32086/01_2022/7vq5_32086_ligands.cif >& 7vq5.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7vq5_32086/01_2022/7vq5_32086.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7vq5_32086/01_2022/7vq5_32086.map 3.1
Refinement ran but no refined model file.