INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7wtd_32779/12_2022/7wtd_32779.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 7wtd_32779.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Build ligand and use chemical components : COA
Traceback (most recent call last):
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/build/../modules/elbow/elbow/command_line/ready_set.py", line 1108, in <module>
    run(args)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/build/../modules/elbow/elbow/command_line/ready_set.py", line 882, in run
    random_seed=working_params.ready_set.run_options.random_seed,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/build/../modules/elbow/elbow/command_line/ready_set.py", line 266, in run_though_all_the_options
    None),
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/scripts/elbow_on_pdb_file.py", line 2487, in run
    hydrogens=hydrogens,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/scripts/elbow_on_pdb_file.py", line 1516, in elbow_on_pdb_file
    verbose=verbose,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/command_line/check_residues_against_monomer_lib.py", line 24, in run
    master_molecule = any_chemical_format_reader(filename, simple=False)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/chemistry/any_chemical_format_reader.py", line 278, in any_chemical_format_reader
    remove_no_conformers=return_all_pdb_atoms_including_alternates,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/pdb/pdb_processor.py", line 384, in ProduceSimpleMoleculeClass
    mol.pdb_info = self.ProducePDBInformationClass()
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/pdb/pdb_processor.py", line 332, in ProducePDBInformationClass
    info["residue_formulae"] = self.GetFormulae()
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/pdb/pdb_processor.py", line 313, in GetFormulae
    tmp = {"number" : int(number)}
ValueError: invalid literal for int() with base 10: 'C21 N7 O16 P3 S  '