phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7xct_33127/06_2022/7xct_33127_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7xct_33127/06_2022/7xct_33127.map refinement.macro_cycles=10 scattering_table=electron resolution=2.72 write_initial_geo_file=False >& 7xct.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7xct_33127/06_2022/7xct_33127.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7xct_33127/06_2022/7xct_33127.map 2.72
Refinement ran but no refined model file.