phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7y4s_33606/04_2023/7y4s_33606.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7y4s_33606/04_2023/7y4s_33606.map refinement.macro_cycles=10 scattering_table=electron resolution=3.5 write_initial_geo_file=False >& 7y4s.txt failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7y4s_33606/04_2023/7y4s_33606.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7y4s_33606/04_2023/7y4s_33606.map 3.5 Refinement ran but no refined model file.