phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yij_33860/05_2023/7yij_33860.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yij_33860/05_2023/7yij_33860.map refinement.macro_cycles=10 scattering_table=electron resolution=3.8 write_initial_geo_file=False >& 7yij.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yij_33860/05_2023/7yij_33860.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yij_33860/05_2023/7yij_33860.map 3.8
Refinement ran but no refined model file.