phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yla_33904/10_2023/7yla_33904_neut_trim_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yla_33904/10_2023/7yla_33904.map refinement.macro_cycles=10 scattering_table=electron resolution=2.52 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yla_33904/10_2023/7yla_33904_neut_trim_ligands.cif >& 7yla.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yla_33904/10_2023/7yla_33904.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yla_33904/10_2023/7yla_33904.map 2.52
Refinement ran but no refined model file.