phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yvq_34136/05_2023/7yvq_34136.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yvq_34136/05_2023/7yvq_34136.map refinement.macro_cycles=10 scattering_table=electron resolution=3.18 write_initial_geo_file=False >& 7yvq.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yvq_34136/05_2023/7yvq_34136.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7yvq_34136/05_2023/7yvq_34136.map 3.18
Refinement ran but no refined model file.