INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7zub_14971/12_2022/7zub_14971_trim_trim.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 7zub_14971_trim_trim.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Attempting to download Chemical Components file for JY6
  Running eLBOW on JY6.cif

JY6   C11     C12   aromatic      1.617 0.020     1.617
JY6   C11     C10   aromatic      1.368 0.020     1.368
JY6   C12     C13   aromatic      1.697 0.020     1.697
JY6   C10     C9    aromatic      2.183 0.020     2.183
JY6   C13     C14   aromatic      1.605 0.020     1.605
JY6   C9      C14   aromatic      1.270 0.020     1.270
JY6   C9      C8    single        2.233 0.020     2.233
JY6   C14     N     single        2.000 0.020     2.000
JY6   C8      O     double        2.872 0.020     2.872
JY6   C8      C7    single        1.656 0.020     1.656
JY6   N       C7    single        1.901 0.020     1.901
JY6   C7      C6    double        1.313 0.020     1.313
JY6   C6      C4    single        2.411 0.020     2.411
JY6   C6      C15   single        0.000 0.020     0.000
JY6   C5      C4    aromatic      1.726 0.020     1.726
JY6   C5      C     aromatic      0.966 0.020     0.966
JY6   C4      C3    aromatic      1.050 0.020     1.050
JY6   O1      C15   double        2.829 0.020     2.829
JY6   C15     N1    single        3.049 0.020     3.049
1.451533
Sorry: Bond length too long : 3.05