Statistics failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8b3q_15833/08_2024/8b3q_15833.cif /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8b3q_15833/08_2024/8b3q_15833.map 2.58 Traceback (most recent call last): File "/net/marbles/raid1/dorothee/rerefine/cryoem/rerefine_script.py", line 454, in get_statistics logger = null_out()) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5409/modules/phenix/phenix/programs/validation_cryoem.py", line 46, in get_model_stat log = logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5409/modules/cctbx_project/mmtbx/secondary_structure/ss_validation.py", line 246, in __init__ print("%s" % ss_elem.as_pdb_str(), file=self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5409/modules/cctbx_project/iotbx/pdb/secondary_structure.py", line 2180, in as_pdb_str "Please fix code to use as_pdb_or_mmcif_str instead of as_pdb_str") AssertionError: Helix does not fit in PDB format. Please fix code to use as_pdb_or_mmcif_str instead of as_pdb_str