phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8ctk_26993/11_2022/8ctk_26993.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8ctk_26993/11_2022/8ctk_26993.map refinement.macro_cycles=10 scattering_table=electron resolution=3.52 write_initial_geo_file=False >& 8ctk.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8ctk_26993/11_2022/8ctk_26993.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8ctk_26993/11_2022/8ctk_26993.map 3.52
Refinement ran but no refined model file.