INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8djm_27461/12_2023/8djm_27461.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 8djm_27461.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Build ligand and use monomer library to name atoms : AJP
Sorry: 
    Atoms in the input are supposed to be bound
     
    C08(AJP) - C07(AJP) = 2.00

    Fix the input file and retry

    EXITING