INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8dq0_27645/06_2024/8dq0_27645_trim.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 8dq0_27645_trim.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Build ligand and use monomer library to name atoms : K5G
Sorry: 
    Atoms in the input are supposed to be bound
     
    C12(K5G) - C13(K5G) = 1.87

    Fix the input file and retry

    EXITING