Starting phenix.real_space_refine (version: dev)
on Fri Dec 16 21:46:48 2022 by dcliebschner
===============================================================================

Processing files:
-------------------------------------------------------------------------------

  Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e01_27812/12_2022/8e01_27812.pdb
  Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e01_27812/12_2022/8e01_27812.map

Processing PHIL parameters:
-------------------------------------------------------------------------------

  Adding command-line PHIL:
  -------------------------
    refinement.macro_cycles=10
    scattering_table=electron
    resolution=3.4
    write_initial_geo_file=False

Final processed PHIL parameters:
-------------------------------------------------------------------------------
  data_manager {
    real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e01_27812/12_2022/8e01_27812.map"
    default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e01_27812/12_2022/8e01_27812.map"
    model {
      file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e01_27812/12_2022/8e01_27812.pdb"
    }
    default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e01_27812/12_2022/8e01_27812.pdb"
  }
  resolution = 3.4
  write_initial_geo_file = False
  refinement {
    macro_cycles = 10
  }


Starting job
===============================================================================
-------------------------------------------------------------------------------
Citation:
*********
Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams
PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography.
Acta Cryst. D74:531-544.

Validating inputs
-------------------------------------------------------------------------------
Processing inputs
*****************
Set random seed
  Set to: 0
Set model cs if undefined
Decide on map wrapping
  Map wrapping is set to: False
Normalize map: mean=0, sd=1
  Input map: mean=   0.007 sd=   0.216
Set stop_for_unknowns flag
  Set to: True
Assert model is a single copy model
Assert all atoms have isotropic ADPs
Construct map_model_manager
Extract box with map and model
Check model and map are aligned
Convert atoms to be neutral
Process input model

  Symmetric amino acids flipped
    Residue "B ASP   68": "OD1" <-> "OD2"
    Residue "B PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "A ASP   68": "OD1" <-> "OD2"
    Residue "A PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "C ASP   68": "OD1" <-> "OD2"
    Residue "C PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "D ASP   68": "OD1" <-> "OD2"
    Residue "D PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "E ASP   68": "OD1" <-> "OD2"
    Residue "E PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "F ASP   68": "OD1" <-> "OD2"
    Residue "F PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "G ASP   68": "OD1" <-> "OD2"
    Residue "G PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "H ASP   68": "OD1" <-> "OD2"
    Residue "H PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "I ASP   68": "OD1" <-> "OD2"
    Residue "I PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "J ASP   68": "OD1" <-> "OD2"
    Residue "J PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "K ASP   68": "OD1" <-> "OD2"
    Residue "K PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "L ASP   68": "OD1" <-> "OD2"
    Residue "L PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "M ASP   68": "OD1" <-> "OD2"
    Residue "M PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "N ASP   68": "OD1" <-> "OD2"
    Residue "N PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "O ASP   68": "OD1" <-> "OD2"
    Residue "O PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "P ASP   68": "OD1" <-> "OD2"
    Residue "P PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "Q ASP   68": "OD1" <-> "OD2"
    Residue "Q PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "R ASP   68": "OD1" <-> "OD2"
    Residue "R PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "S ASP   68": "OD1" <-> "OD2"
    Residue "S PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "T ASP   68": "OD1" <-> "OD2"
    Residue "T PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "U ASP   68": "OD1" <-> "OD2"
    Residue "U PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "V ASP   68": "OD1" <-> "OD2"
    Residue "V PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "W ASP   68": "OD1" <-> "OD2"
    Residue "W PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "X ASP   68": "OD1" <-> "OD2"
    Residue "X PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "Y ASP   68": "OD1" <-> "OD2"
    Residue "Y PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "Z ASP   68": "OD1" <-> "OD2"
    Residue "Z PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "0 ASP   68": "OD1" <-> "OD2"
    Residue "0 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "1 ASP   68": "OD1" <-> "OD2"
    Residue "1 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "2 ASP   68": "OD1" <-> "OD2"
    Residue "2 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "3 ASP   68": "OD1" <-> "OD2"
    Residue "3 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "4 ASP   68": "OD1" <-> "OD2"
    Residue "4 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "5 ASP   68": "OD1" <-> "OD2"
    Residue "5 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "6 ASP   68": "OD1" <-> "OD2"
    Residue "6 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "7 ASP   68": "OD1" <-> "OD2"
    Residue "7 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "8 ASP   68": "OD1" <-> "OD2"
    Residue "8 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "9 ASP   68": "OD1" <-> "OD2"
    Residue "9 PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "a ASP   68": "OD1" <-> "OD2"
    Residue "a PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "b ASP   68": "OD1" <-> "OD2"
    Residue "b PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "c ASP   68": "OD1" <-> "OD2"
    Residue "c PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "d ASP   68": "OD1" <-> "OD2"
    Residue "d PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "e ASP   68": "OD1" <-> "OD2"
    Residue "e PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "f ASP   68": "OD1" <-> "OD2"
    Residue "f PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "g ASP   68": "OD1" <-> "OD2"
    Residue "g PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "h ASP   68": "OD1" <-> "OD2"
    Residue "h PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "i ASP   68": "OD1" <-> "OD2"
    Residue "i PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "j ASP   68": "OD1" <-> "OD2"
    Residue "j PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "k ASP   68": "OD1" <-> "OD2"
    Residue "k PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "l ASP   68": "OD1" <-> "OD2"
    Residue "l PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "m ASP   68": "OD1" <-> "OD2"
    Residue "m PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "n ASP   68": "OD1" <-> "OD2"
    Residue "n PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "o ASP   68": "OD1" <-> "OD2"
    Residue "o PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "p ASP   68": "OD1" <-> "OD2"
    Residue "p PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "q ASP   68": "OD1" <-> "OD2"
    Residue "q PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "r ASP   68": "OD1" <-> "OD2"
    Residue "r PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "s ASP   68": "OD1" <-> "OD2"
    Residue "s PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "t ASP   68": "OD1" <-> "OD2"
    Residue "t PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "u ASP   68": "OD1" <-> "OD2"
    Residue "u PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "v ASP   68": "OD1" <-> "OD2"
    Residue "v PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "w ASP   68": "OD1" <-> "OD2"
    Residue "w PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "x ASP   68": "OD1" <-> "OD2"
    Residue "x PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
    Residue "y ASP   68": "OD1" <-> "OD2"
    Residue "y PHE  118": "CD1" <-> "CD2" "CE1" <-> "CE2"
  Time to flip residues: 0.29s

  Monomer Library directory:
    "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/chem_data/mon_lib"
  Total number of atoms: 92598
  Number of models: 1
  Model: ""
    Number of chains: 61
    Chain: "B"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "A"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "C"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "D"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "E"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "F"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "G"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "H"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "I"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "J"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "K"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "L"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "M"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "N"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "O"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "P"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "Q"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "R"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "S"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "T"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "U"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "V"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "W"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "X"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "Y"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "Z"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "0"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "1"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "2"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "3"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "4"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "5"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "6"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "7"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "8"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "9"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "a"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "b"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "c"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "d"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "e"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "f"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "g"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "h"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "i"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "j"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "k"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "l"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "m"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "n"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "o"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "p"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "q"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "r"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "s"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "t"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "u"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "v"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "w"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "x"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
    Chain: "y"
      Number of atoms: 1518
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 201, 1518
          Classifications: {'peptide': 201}
          Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 190}
  Time building chain proxies: 40.90, per 1000 atoms: 0.44
  Number of scatterers: 92598
  At special positions: 0
  Unit cell: (270.6, 270.6, 270.6, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 4
    Type Number    sf(0)
     S     610     16.00
     O   16592      8.00
     N   15128      7.00
     C   60268      6.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=67, symmetry=0
    Simple disulfide: pdb=" SG  CYS B  95 " - pdb=" SG  CYS C  95 " distance=0.95
    Simple disulfide: pdb=" SG  CYS B 119 " - pdb=" SG  CYS C 119 " distance=0.95
    Simple disulfide: pdb=" SG  CYS B 184 " - pdb=" SG  CYS B 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS B 184 " - pdb=" SG  CYS C 184 " distance=0.95
    Simple disulfide: pdb=" SG  CYS B 184 " - pdb=" SG  CYS C 222 " distance=2.10
    Simple disulfide: pdb=" SG  CYS B 222 " - pdb=" SG  CYS C 184 " distance=2.38
    Simple disulfide: pdb=" SG  CYS B 222 " - pdb=" SG  CYS C 222 " distance=0.95
    Simple disulfide: pdb=" SG  CYS A 184 " - pdb=" SG  CYS A 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS C 184 " - pdb=" SG  CYS C 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS D 184 " - pdb=" SG  CYS D 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS E 184 " - pdb=" SG  CYS E 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS F 184 " - pdb=" SG  CYS F 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS G 184 " - pdb=" SG  CYS G 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS H 184 " - pdb=" SG  CYS H 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS I 184 " - pdb=" SG  CYS I 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS J 184 " - pdb=" SG  CYS J 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS K 184 " - pdb=" SG  CYS K 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS L 184 " - pdb=" SG  CYS L 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS M 184 " - pdb=" SG  CYS M 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS N 184 " - pdb=" SG  CYS N 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS O 184 " - pdb=" SG  CYS O 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS P 184 " - pdb=" SG  CYS P 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS Q 184 " - pdb=" SG  CYS Q 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS R 184 " - pdb=" SG  CYS R 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS S 184 " - pdb=" SG  CYS S 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS T 184 " - pdb=" SG  CYS T 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS U 184 " - pdb=" SG  CYS U 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS V 184 " - pdb=" SG  CYS V 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS W 184 " - pdb=" SG  CYS W 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS X 184 " - pdb=" SG  CYS X 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS Y 184 " - pdb=" SG  CYS Y 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS Z 184 " - pdb=" SG  CYS Z 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 0 184 " - pdb=" SG  CYS 0 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 1 184 " - pdb=" SG  CYS 1 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 2 184 " - pdb=" SG  CYS 2 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 3 184 " - pdb=" SG  CYS 3 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 4 184 " - pdb=" SG  CYS 4 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 5 184 " - pdb=" SG  CYS 5 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 6 184 " - pdb=" SG  CYS 6 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 7 184 " - pdb=" SG  CYS 7 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 8 184 " - pdb=" SG  CYS 8 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS 9 184 " - pdb=" SG  CYS 9 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS a 184 " - pdb=" SG  CYS a 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS b 184 " - pdb=" SG  CYS b 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS c 184 " - pdb=" SG  CYS c 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS d 184 " - pdb=" SG  CYS d 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS e 184 " - pdb=" SG  CYS e 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS f 184 " - pdb=" SG  CYS f 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS g 184 " - pdb=" SG  CYS g 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS h 184 " - pdb=" SG  CYS h 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS i 184 " - pdb=" SG  CYS i 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS j 184 " - pdb=" SG  CYS j 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS k 184 " - pdb=" SG  CYS k 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS l 184 " - pdb=" SG  CYS l 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS m 184 " - pdb=" SG  CYS m 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS n 184 " - pdb=" SG  CYS n 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS o 184 " - pdb=" SG  CYS o 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS p 184 " - pdb=" SG  CYS p 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS q 184 " - pdb=" SG  CYS q 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS r 184 " - pdb=" SG  CYS r 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS s 184 " - pdb=" SG  CYS s 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS t 184 " - pdb=" SG  CYS t 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS u 184 " - pdb=" SG  CYS u 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS v 184 " - pdb=" SG  CYS v 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS w 184 " - pdb=" SG  CYS w 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS x 184 " - pdb=" SG  CYS x 222 " distance=2.03
    Simple disulfide: pdb=" SG  CYS y 184 " - pdb=" SG  CYS y 222 " distance=2.03

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.50
        Amino acid           : False - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 31.50
  Conformation dependent library (CDL) restraints added in 10.6 seconds
  

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  22204

  Finding SS restraints...
    Secondary structure from input PDB file:
      610 helices and 183 sheets defined
      53.7% alpha, 11.9% beta
      0 base pairs and 0 stacking pairs defined.
    Time for finding SS restraints: 4.81
  Creating SS restraints...
    Processing helix  chain 'A' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS A  28 " --> pdb=" O   GLU A  24 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 39 through 53
    Processing helix  chain 'A' and resid 66 through 74
    Processing helix  chain 'A' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU A  79 " --> pdb=" O   SER A  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET A  80 " --> pdb=" O   PHE A  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'A' and resid 75 through 80'
    Processing helix  chain 'A' and resid 91 through 101
    Processing helix  chain 'A' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE A 118 " --> pdb=" O   GLU A 114 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 132 through 143
    Processing helix  chain 'A' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS A 161 " --> pdb=" O   PRO A 157 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE A 187 " --> pdb=" O   VAL A 183 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 204 through 222
    Processing helix  chain 'B' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS B  28 " --> pdb=" O   GLU B  24 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 39 through 53
    Processing helix  chain 'B' and resid 66 through 74
    Processing helix  chain 'B' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU B  79 " --> pdb=" O   SER B  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET B  80 " --> pdb=" O   PHE B  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'B' and resid 75 through 80'
    Processing helix  chain 'B' and resid 91 through 101
    Processing helix  chain 'B' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE B 118 " --> pdb=" O   GLU B 114 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 132 through 143
    Processing helix  chain 'B' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS B 161 " --> pdb=" O   PRO B 157 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE B 187 " --> pdb=" O   VAL B 183 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 204 through 222
    Processing helix  chain 'C' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS C  28 " --> pdb=" O   GLU C  24 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 39 through 53
    Processing helix  chain 'C' and resid 66 through 74
    Processing helix  chain 'C' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU C  79 " --> pdb=" O   SER C  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET C  80 " --> pdb=" O   PHE C  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'C' and resid 75 through 80'
    Processing helix  chain 'C' and resid 91 through 101
    Processing helix  chain 'C' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE C 118 " --> pdb=" O   GLU C 114 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 132 through 143
    Processing helix  chain 'C' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS C 161 " --> pdb=" O   PRO C 157 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE C 187 " --> pdb=" O   VAL C 183 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 204 through 222
    Processing helix  chain 'D' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS D  28 " --> pdb=" O   GLU D  24 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 39 through 53
    Processing helix  chain 'D' and resid 66 through 74
    Processing helix  chain 'D' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU D  79 " --> pdb=" O   SER D  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET D  80 " --> pdb=" O   PHE D  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'D' and resid 75 through 80'
    Processing helix  chain 'D' and resid 91 through 101
    Processing helix  chain 'D' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE D 118 " --> pdb=" O   GLU D 114 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 132 through 143
    Processing helix  chain 'D' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS D 161 " --> pdb=" O   PRO D 157 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE D 187 " --> pdb=" O   VAL D 183 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 204 through 222
    Processing helix  chain 'E' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS E  28 " --> pdb=" O   GLU E  24 " (cutoff:3.500A)
    Processing helix  chain 'E' and resid 39 through 53
    Processing helix  chain 'E' and resid 66 through 74
    Processing helix  chain 'E' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU E  79 " --> pdb=" O   SER E  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET E  80 " --> pdb=" O   PHE E  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'E' and resid 75 through 80'
    Processing helix  chain 'E' and resid 91 through 101
    Processing helix  chain 'E' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE E 118 " --> pdb=" O   GLU E 114 " (cutoff:3.500A)
    Processing helix  chain 'E' and resid 132 through 143
    Processing helix  chain 'E' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS E 161 " --> pdb=" O   PRO E 157 " (cutoff:3.500A)
    Processing helix  chain 'E' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE E 187 " --> pdb=" O   VAL E 183 " (cutoff:3.500A)
    Processing helix  chain 'E' and resid 204 through 222
    Processing helix  chain 'F' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS F  28 " --> pdb=" O   GLU F  24 " (cutoff:3.500A)
    Processing helix  chain 'F' and resid 39 through 53
    Processing helix  chain 'F' and resid 66 through 74
    Processing helix  chain 'F' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU F  79 " --> pdb=" O   SER F  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET F  80 " --> pdb=" O   PHE F  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'F' and resid 75 through 80'
    Processing helix  chain 'F' and resid 91 through 101
    Processing helix  chain 'F' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE F 118 " --> pdb=" O   GLU F 114 " (cutoff:3.500A)
    Processing helix  chain 'F' and resid 132 through 143
    Processing helix  chain 'F' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS F 161 " --> pdb=" O   PRO F 157 " (cutoff:3.500A)
    Processing helix  chain 'F' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE F 187 " --> pdb=" O   VAL F 183 " (cutoff:3.500A)
    Processing helix  chain 'F' and resid 204 through 222
    Processing helix  chain 'G' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS G  28 " --> pdb=" O   GLU G  24 " (cutoff:3.500A)
    Processing helix  chain 'G' and resid 39 through 53
    Processing helix  chain 'G' and resid 66 through 74
    Processing helix  chain 'G' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU G  79 " --> pdb=" O   SER G  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET G  80 " --> pdb=" O   PHE G  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'G' and resid 75 through 80'
    Processing helix  chain 'G' and resid 91 through 101
    Processing helix  chain 'G' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE G 118 " --> pdb=" O   GLU G 114 " (cutoff:3.500A)
    Processing helix  chain 'G' and resid 132 through 143
    Processing helix  chain 'G' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS G 161 " --> pdb=" O   PRO G 157 " (cutoff:3.500A)
    Processing helix  chain 'G' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE G 187 " --> pdb=" O   VAL G 183 " (cutoff:3.500A)
    Processing helix  chain 'G' and resid 204 through 222
    Processing helix  chain 'H' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS H  28 " --> pdb=" O   GLU H  24 " (cutoff:3.500A)
    Processing helix  chain 'H' and resid 39 through 53
    Processing helix  chain 'H' and resid 66 through 74
    Processing helix  chain 'H' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU H  79 " --> pdb=" O   SER H  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET H  80 " --> pdb=" O   PHE H  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'H' and resid 75 through 80'
    Processing helix  chain 'H' and resid 91 through 101
    Processing helix  chain 'H' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE H 118 " --> pdb=" O   GLU H 114 " (cutoff:3.500A)
    Processing helix  chain 'H' and resid 132 through 143
    Processing helix  chain 'H' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS H 161 " --> pdb=" O   PRO H 157 " (cutoff:3.500A)
    Processing helix  chain 'H' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE H 187 " --> pdb=" O   VAL H 183 " (cutoff:3.500A)
    Processing helix  chain 'H' and resid 204 through 222
    Processing helix  chain 'I' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS I  28 " --> pdb=" O   GLU I  24 " (cutoff:3.500A)
    Processing helix  chain 'I' and resid 39 through 53
    Processing helix  chain 'I' and resid 66 through 74
    Processing helix  chain 'I' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU I  79 " --> pdb=" O   SER I  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET I  80 " --> pdb=" O   PHE I  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'I' and resid 75 through 80'
    Processing helix  chain 'I' and resid 91 through 101
    Processing helix  chain 'I' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE I 118 " --> pdb=" O   GLU I 114 " (cutoff:3.500A)
    Processing helix  chain 'I' and resid 132 through 143
    Processing helix  chain 'I' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS I 161 " --> pdb=" O   PRO I 157 " (cutoff:3.500A)
    Processing helix  chain 'I' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE I 187 " --> pdb=" O   VAL I 183 " (cutoff:3.500A)
    Processing helix  chain 'I' and resid 204 through 222
    Processing helix  chain 'J' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS J  28 " --> pdb=" O   GLU J  24 " (cutoff:3.500A)
    Processing helix  chain 'J' and resid 39 through 53
    Processing helix  chain 'J' and resid 66 through 74
    Processing helix  chain 'J' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU J  79 " --> pdb=" O   SER J  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET J  80 " --> pdb=" O   PHE J  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'J' and resid 75 through 80'
    Processing helix  chain 'J' and resid 91 through 101
    Processing helix  chain 'J' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE J 118 " --> pdb=" O   GLU J 114 " (cutoff:3.500A)
    Processing helix  chain 'J' and resid 132 through 143
    Processing helix  chain 'J' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS J 161 " --> pdb=" O   PRO J 157 " (cutoff:3.500A)
    Processing helix  chain 'J' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE J 187 " --> pdb=" O   VAL J 183 " (cutoff:3.500A)
    Processing helix  chain 'J' and resid 204 through 222
    Processing helix  chain 'K' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS K  28 " --> pdb=" O   GLU K  24 " (cutoff:3.500A)
    Processing helix  chain 'K' and resid 39 through 53
    Processing helix  chain 'K' and resid 66 through 74
    Processing helix  chain 'K' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU K  79 " --> pdb=" O   SER K  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET K  80 " --> pdb=" O   PHE K  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'K' and resid 75 through 80'
    Processing helix  chain 'K' and resid 91 through 101
    Processing helix  chain 'K' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE K 118 " --> pdb=" O   GLU K 114 " (cutoff:3.500A)
    Processing helix  chain 'K' and resid 132 through 143
    Processing helix  chain 'K' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS K 161 " --> pdb=" O   PRO K 157 " (cutoff:3.500A)
    Processing helix  chain 'K' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE K 187 " --> pdb=" O   VAL K 183 " (cutoff:3.500A)
    Processing helix  chain 'K' and resid 204 through 222
    Processing helix  chain 'L' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS L  28 " --> pdb=" O   GLU L  24 " (cutoff:3.500A)
    Processing helix  chain 'L' and resid 39 through 53
    Processing helix  chain 'L' and resid 66 through 74
    Processing helix  chain 'L' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU L  79 " --> pdb=" O   SER L  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET L  80 " --> pdb=" O   PHE L  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'L' and resid 75 through 80'
    Processing helix  chain 'L' and resid 91 through 101
    Processing helix  chain 'L' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE L 118 " --> pdb=" O   GLU L 114 " (cutoff:3.500A)
    Processing helix  chain 'L' and resid 132 through 143
    Processing helix  chain 'L' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS L 161 " --> pdb=" O   PRO L 157 " (cutoff:3.500A)
    Processing helix  chain 'L' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE L 187 " --> pdb=" O   VAL L 183 " (cutoff:3.500A)
    Processing helix  chain 'L' and resid 204 through 222
    Processing helix  chain 'M' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS M  28 " --> pdb=" O   GLU M  24 " (cutoff:3.500A)
    Processing helix  chain 'M' and resid 39 through 53
    Processing helix  chain 'M' and resid 66 through 74
    Processing helix  chain 'M' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU M  79 " --> pdb=" O   SER M  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET M  80 " --> pdb=" O   PHE M  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'M' and resid 75 through 80'
    Processing helix  chain 'M' and resid 91 through 101
    Processing helix  chain 'M' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE M 118 " --> pdb=" O   GLU M 114 " (cutoff:3.500A)
    Processing helix  chain 'M' and resid 132 through 143
    Processing helix  chain 'M' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS M 161 " --> pdb=" O   PRO M 157 " (cutoff:3.500A)
    Processing helix  chain 'M' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE M 187 " --> pdb=" O   VAL M 183 " (cutoff:3.500A)
    Processing helix  chain 'M' and resid 204 through 222
    Processing helix  chain 'N' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS N  28 " --> pdb=" O   GLU N  24 " (cutoff:3.500A)
    Processing helix  chain 'N' and resid 39 through 53
    Processing helix  chain 'N' and resid 66 through 74
    Processing helix  chain 'N' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU N  79 " --> pdb=" O   SER N  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET N  80 " --> pdb=" O   PHE N  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'N' and resid 75 through 80'
    Processing helix  chain 'N' and resid 91 through 101
    Processing helix  chain 'N' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE N 118 " --> pdb=" O   GLU N 114 " (cutoff:3.500A)
    Processing helix  chain 'N' and resid 132 through 143
    Processing helix  chain 'N' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS N 161 " --> pdb=" O   PRO N 157 " (cutoff:3.500A)
    Processing helix  chain 'N' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE N 187 " --> pdb=" O   VAL N 183 " (cutoff:3.500A)
    Processing helix  chain 'N' and resid 204 through 222
    Processing helix  chain 'O' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS O  28 " --> pdb=" O   GLU O  24 " (cutoff:3.500A)
    Processing helix  chain 'O' and resid 39 through 53
    Processing helix  chain 'O' and resid 66 through 74
    Processing helix  chain 'O' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU O  79 " --> pdb=" O   SER O  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET O  80 " --> pdb=" O   PHE O  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'O' and resid 75 through 80'
    Processing helix  chain 'O' and resid 91 through 101
    Processing helix  chain 'O' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE O 118 " --> pdb=" O   GLU O 114 " (cutoff:3.500A)
    Processing helix  chain 'O' and resid 132 through 143
    Processing helix  chain 'O' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS O 161 " --> pdb=" O   PRO O 157 " (cutoff:3.500A)
    Processing helix  chain 'O' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE O 187 " --> pdb=" O   VAL O 183 " (cutoff:3.500A)
    Processing helix  chain 'O' and resid 204 through 222
    Processing helix  chain 'P' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS P  28 " --> pdb=" O   GLU P  24 " (cutoff:3.500A)
    Processing helix  chain 'P' and resid 39 through 53
    Processing helix  chain 'P' and resid 66 through 74
    Processing helix  chain 'P' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU P  79 " --> pdb=" O   SER P  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET P  80 " --> pdb=" O   PHE P  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'P' and resid 75 through 80'
    Processing helix  chain 'P' and resid 91 through 101
    Processing helix  chain 'P' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE P 118 " --> pdb=" O   GLU P 114 " (cutoff:3.500A)
    Processing helix  chain 'P' and resid 132 through 143
    Processing helix  chain 'P' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS P 161 " --> pdb=" O   PRO P 157 " (cutoff:3.500A)
    Processing helix  chain 'P' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE P 187 " --> pdb=" O   VAL P 183 " (cutoff:3.500A)
    Processing helix  chain 'P' and resid 204 through 222
    Processing helix  chain 'Q' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS Q  28 " --> pdb=" O   GLU Q  24 " (cutoff:3.500A)
    Processing helix  chain 'Q' and resid 39 through 53
    Processing helix  chain 'Q' and resid 66 through 74
    Processing helix  chain 'Q' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU Q  79 " --> pdb=" O   SER Q  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET Q  80 " --> pdb=" O   PHE Q  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'Q' and resid 75 through 80'
    Processing helix  chain 'Q' and resid 91 through 101
    Processing helix  chain 'Q' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE Q 118 " --> pdb=" O   GLU Q 114 " (cutoff:3.500A)
    Processing helix  chain 'Q' and resid 132 through 143
    Processing helix  chain 'Q' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS Q 161 " --> pdb=" O   PRO Q 157 " (cutoff:3.500A)
    Processing helix  chain 'Q' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE Q 187 " --> pdb=" O   VAL Q 183 " (cutoff:3.500A)
    Processing helix  chain 'Q' and resid 204 through 222
    Processing helix  chain 'R' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS R  28 " --> pdb=" O   GLU R  24 " (cutoff:3.500A)
    Processing helix  chain 'R' and resid 39 through 53
    Processing helix  chain 'R' and resid 66 through 74
    Processing helix  chain 'R' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU R  79 " --> pdb=" O   SER R  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET R  80 " --> pdb=" O   PHE R  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'R' and resid 75 through 80'
    Processing helix  chain 'R' and resid 91 through 101
    Processing helix  chain 'R' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE R 118 " --> pdb=" O   GLU R 114 " (cutoff:3.500A)
    Processing helix  chain 'R' and resid 132 through 143
    Processing helix  chain 'R' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS R 161 " --> pdb=" O   PRO R 157 " (cutoff:3.500A)
    Processing helix  chain 'R' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE R 187 " --> pdb=" O   VAL R 183 " (cutoff:3.500A)
    Processing helix  chain 'R' and resid 204 through 222
    Processing helix  chain 'S' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS S  28 " --> pdb=" O   GLU S  24 " (cutoff:3.500A)
    Processing helix  chain 'S' and resid 39 through 53
    Processing helix  chain 'S' and resid 66 through 74
    Processing helix  chain 'S' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU S  79 " --> pdb=" O   SER S  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET S  80 " --> pdb=" O   PHE S  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'S' and resid 75 through 80'
    Processing helix  chain 'S' and resid 91 through 101
    Processing helix  chain 'S' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE S 118 " --> pdb=" O   GLU S 114 " (cutoff:3.500A)
    Processing helix  chain 'S' and resid 132 through 143
    Processing helix  chain 'S' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS S 161 " --> pdb=" O   PRO S 157 " (cutoff:3.500A)
    Processing helix  chain 'S' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE S 187 " --> pdb=" O   VAL S 183 " (cutoff:3.500A)
    Processing helix  chain 'S' and resid 204 through 222
    Processing helix  chain 'T' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS T  28 " --> pdb=" O   GLU T  24 " (cutoff:3.500A)
    Processing helix  chain 'T' and resid 39 through 53
    Processing helix  chain 'T' and resid 66 through 74
    Processing helix  chain 'T' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU T  79 " --> pdb=" O   SER T  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET T  80 " --> pdb=" O   PHE T  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'T' and resid 75 through 80'
    Processing helix  chain 'T' and resid 91 through 101
    Processing helix  chain 'T' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE T 118 " --> pdb=" O   GLU T 114 " (cutoff:3.500A)
    Processing helix  chain 'T' and resid 132 through 143
    Processing helix  chain 'T' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS T 161 " --> pdb=" O   PRO T 157 " (cutoff:3.500A)
    Processing helix  chain 'T' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE T 187 " --> pdb=" O   VAL T 183 " (cutoff:3.500A)
    Processing helix  chain 'T' and resid 204 through 222
    Processing helix  chain 'U' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS U  28 " --> pdb=" O   GLU U  24 " (cutoff:3.500A)
    Processing helix  chain 'U' and resid 39 through 53
    Processing helix  chain 'U' and resid 66 through 74
    Processing helix  chain 'U' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU U  79 " --> pdb=" O   SER U  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET U  80 " --> pdb=" O   PHE U  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'U' and resid 75 through 80'
    Processing helix  chain 'U' and resid 91 through 101
    Processing helix  chain 'U' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE U 118 " --> pdb=" O   GLU U 114 " (cutoff:3.500A)
    Processing helix  chain 'U' and resid 132 through 143
    Processing helix  chain 'U' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS U 161 " --> pdb=" O   PRO U 157 " (cutoff:3.500A)
    Processing helix  chain 'U' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE U 187 " --> pdb=" O   VAL U 183 " (cutoff:3.500A)
    Processing helix  chain 'U' and resid 204 through 222
    Processing helix  chain 'V' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS V  28 " --> pdb=" O   GLU V  24 " (cutoff:3.500A)
    Processing helix  chain 'V' and resid 39 through 53
    Processing helix  chain 'V' and resid 66 through 74
    Processing helix  chain 'V' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU V  79 " --> pdb=" O   SER V  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET V  80 " --> pdb=" O   PHE V  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'V' and resid 75 through 80'
    Processing helix  chain 'V' and resid 91 through 101
    Processing helix  chain 'V' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE V 118 " --> pdb=" O   GLU V 114 " (cutoff:3.500A)
    Processing helix  chain 'V' and resid 132 through 143
    Processing helix  chain 'V' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS V 161 " --> pdb=" O   PRO V 157 " (cutoff:3.500A)
    Processing helix  chain 'V' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE V 187 " --> pdb=" O   VAL V 183 " (cutoff:3.500A)
    Processing helix  chain 'V' and resid 204 through 222
    Processing helix  chain 'W' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS W  28 " --> pdb=" O   GLU W  24 " (cutoff:3.500A)
    Processing helix  chain 'W' and resid 39 through 53
    Processing helix  chain 'W' and resid 66 through 74
    Processing helix  chain 'W' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU W  79 " --> pdb=" O   SER W  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET W  80 " --> pdb=" O   PHE W  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'W' and resid 75 through 80'
    Processing helix  chain 'W' and resid 91 through 101
    Processing helix  chain 'W' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE W 118 " --> pdb=" O   GLU W 114 " (cutoff:3.500A)
    Processing helix  chain 'W' and resid 132 through 143
    Processing helix  chain 'W' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS W 161 " --> pdb=" O   PRO W 157 " (cutoff:3.500A)
    Processing helix  chain 'W' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE W 187 " --> pdb=" O   VAL W 183 " (cutoff:3.500A)
    Processing helix  chain 'W' and resid 204 through 222
    Processing helix  chain 'X' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS X  28 " --> pdb=" O   GLU X  24 " (cutoff:3.500A)
    Processing helix  chain 'X' and resid 39 through 53
    Processing helix  chain 'X' and resid 66 through 74
    Processing helix  chain 'X' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU X  79 " --> pdb=" O   SER X  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET X  80 " --> pdb=" O   PHE X  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'X' and resid 75 through 80'
    Processing helix  chain 'X' and resid 91 through 101
    Processing helix  chain 'X' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE X 118 " --> pdb=" O   GLU X 114 " (cutoff:3.500A)
    Processing helix  chain 'X' and resid 132 through 143
    Processing helix  chain 'X' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS X 161 " --> pdb=" O   PRO X 157 " (cutoff:3.500A)
    Processing helix  chain 'X' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE X 187 " --> pdb=" O   VAL X 183 " (cutoff:3.500A)
    Processing helix  chain 'X' and resid 204 through 222
    Processing helix  chain 'Y' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS Y  28 " --> pdb=" O   GLU Y  24 " (cutoff:3.500A)
    Processing helix  chain 'Y' and resid 39 through 53
    Processing helix  chain 'Y' and resid 66 through 74
    Processing helix  chain 'Y' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU Y  79 " --> pdb=" O   SER Y  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET Y  80 " --> pdb=" O   PHE Y  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'Y' and resid 75 through 80'
    Processing helix  chain 'Y' and resid 91 through 101
    Processing helix  chain 'Y' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE Y 118 " --> pdb=" O   GLU Y 114 " (cutoff:3.500A)
    Processing helix  chain 'Y' and resid 132 through 143
    Processing helix  chain 'Y' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS Y 161 " --> pdb=" O   PRO Y 157 " (cutoff:3.500A)
    Processing helix  chain 'Y' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE Y 187 " --> pdb=" O   VAL Y 183 " (cutoff:3.500A)
    Processing helix  chain 'Y' and resid 204 through 222
    Processing helix  chain 'Z' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS Z  28 " --> pdb=" O   GLU Z  24 " (cutoff:3.500A)
    Processing helix  chain 'Z' and resid 39 through 53
    Processing helix  chain 'Z' and resid 66 through 74
    Processing helix  chain 'Z' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU Z  79 " --> pdb=" O   SER Z  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET Z  80 " --> pdb=" O   PHE Z  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'Z' and resid 75 through 80'
    Processing helix  chain 'Z' and resid 91 through 101
    Processing helix  chain 'Z' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE Z 118 " --> pdb=" O   GLU Z 114 " (cutoff:3.500A)
    Processing helix  chain 'Z' and resid 132 through 143
    Processing helix  chain 'Z' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS Z 161 " --> pdb=" O   PRO Z 157 " (cutoff:3.500A)
    Processing helix  chain 'Z' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE Z 187 " --> pdb=" O   VAL Z 183 " (cutoff:3.500A)
    Processing helix  chain 'Z' and resid 204 through 222
    Processing helix  chain '0' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 0  28 " --> pdb=" O   GLU 0  24 " (cutoff:3.500A)
    Processing helix  chain '0' and resid 39 through 53
    Processing helix  chain '0' and resid 66 through 74
    Processing helix  chain '0' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU 0  79 " --> pdb=" O   SER 0  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 0  80 " --> pdb=" O   PHE 0  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '0' and resid 75 through 80'
    Processing helix  chain '0' and resid 91 through 101
    Processing helix  chain '0' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE 0 118 " --> pdb=" O   GLU 0 114 " (cutoff:3.500A)
    Processing helix  chain '0' and resid 132 through 143
    Processing helix  chain '0' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 0 161 " --> pdb=" O   PRO 0 157 " (cutoff:3.500A)
    Processing helix  chain '0' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE 0 187 " --> pdb=" O   VAL 0 183 " (cutoff:3.500A)
    Processing helix  chain '0' and resid 204 through 222
    Processing helix  chain '1' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 1  28 " --> pdb=" O   GLU 1  24 " (cutoff:3.500A)
    Processing helix  chain '1' and resid 39 through 53
    Processing helix  chain '1' and resid 66 through 74
    Processing helix  chain '1' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU 1  79 " --> pdb=" O   SER 1  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET 1  80 " --> pdb=" O   PHE 1  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '1' and resid 75 through 80'
    Processing helix  chain '1' and resid 91 through 101
    Processing helix  chain '1' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE 1 118 " --> pdb=" O   GLU 1 114 " (cutoff:3.500A)
    Processing helix  chain '1' and resid 132 through 143
    Processing helix  chain '1' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 1 161 " --> pdb=" O   PRO 1 157 " (cutoff:3.500A)
    Processing helix  chain '1' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE 1 187 " --> pdb=" O   VAL 1 183 " (cutoff:3.500A)
    Processing helix  chain '1' and resid 204 through 222
    Processing helix  chain '2' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 2  28 " --> pdb=" O   GLU 2  24 " (cutoff:3.500A)
    Processing helix  chain '2' and resid 39 through 53
    Processing helix  chain '2' and resid 66 through 74
    Processing helix  chain '2' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU 2  79 " --> pdb=" O   SER 2  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 2  80 " --> pdb=" O   PHE 2  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '2' and resid 75 through 80'
    Processing helix  chain '2' and resid 91 through 101
    Processing helix  chain '2' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE 2 118 " --> pdb=" O   GLU 2 114 " (cutoff:3.500A)
    Processing helix  chain '2' and resid 132 through 143
    Processing helix  chain '2' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 2 161 " --> pdb=" O   PRO 2 157 " (cutoff:3.500A)
    Processing helix  chain '2' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE 2 187 " --> pdb=" O   VAL 2 183 " (cutoff:3.500A)
    Processing helix  chain '2' and resid 204 through 222
    Processing helix  chain '3' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 3  28 " --> pdb=" O   GLU 3  24 " (cutoff:3.500A)
    Processing helix  chain '3' and resid 39 through 53
    Processing helix  chain '3' and resid 66 through 74
    Processing helix  chain '3' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU 3  79 " --> pdb=" O   SER 3  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 3  80 " --> pdb=" O   PHE 3  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '3' and resid 75 through 80'
    Processing helix  chain '3' and resid 91 through 101
    Processing helix  chain '3' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE 3 118 " --> pdb=" O   GLU 3 114 " (cutoff:3.500A)
    Processing helix  chain '3' and resid 132 through 143
    Processing helix  chain '3' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 3 161 " --> pdb=" O   PRO 3 157 " (cutoff:3.500A)
    Processing helix  chain '3' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE 3 187 " --> pdb=" O   VAL 3 183 " (cutoff:3.500A)
    Processing helix  chain '3' and resid 204 through 222
    Processing helix  chain '4' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 4  28 " --> pdb=" O   GLU 4  24 " (cutoff:3.500A)
    Processing helix  chain '4' and resid 39 through 53
    Processing helix  chain '4' and resid 66 through 74
    Processing helix  chain '4' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU 4  79 " --> pdb=" O   SER 4  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 4  80 " --> pdb=" O   PHE 4  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '4' and resid 75 through 80'
    Processing helix  chain '4' and resid 91 through 101
    Processing helix  chain '4' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE 4 118 " --> pdb=" O   GLU 4 114 " (cutoff:3.500A)
    Processing helix  chain '4' and resid 132 through 143
    Processing helix  chain '4' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS 4 161 " --> pdb=" O   PRO 4 157 " (cutoff:3.500A)
    Processing helix  chain '4' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE 4 187 " --> pdb=" O   VAL 4 183 " (cutoff:3.500A)
    Processing helix  chain '4' and resid 204 through 222
    Processing helix  chain '5' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 5  28 " --> pdb=" O   GLU 5  24 " (cutoff:3.500A)
    Processing helix  chain '5' and resid 39 through 53
    Processing helix  chain '5' and resid 66 through 74
    Processing helix  chain '5' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU 5  79 " --> pdb=" O   SER 5  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 5  80 " --> pdb=" O   PHE 5  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '5' and resid 75 through 80'
    Processing helix  chain '5' and resid 91 through 101
    Processing helix  chain '5' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE 5 118 " --> pdb=" O   GLU 5 114 " (cutoff:3.500A)
    Processing helix  chain '5' and resid 132 through 143
    Processing helix  chain '5' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 5 161 " --> pdb=" O   PRO 5 157 " (cutoff:3.500A)
    Processing helix  chain '5' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE 5 187 " --> pdb=" O   VAL 5 183 " (cutoff:3.500A)
    Processing helix  chain '5' and resid 204 through 222
    Processing helix  chain '6' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 6  28 " --> pdb=" O   GLU 6  24 " (cutoff:3.500A)
    Processing helix  chain '6' and resid 39 through 53
    Processing helix  chain '6' and resid 66 through 74
    Processing helix  chain '6' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU 6  79 " --> pdb=" O   SER 6  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 6  80 " --> pdb=" O   PHE 6  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '6' and resid 75 through 80'
    Processing helix  chain '6' and resid 91 through 101
    Processing helix  chain '6' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE 6 118 " --> pdb=" O   GLU 6 114 " (cutoff:3.500A)
    Processing helix  chain '6' and resid 132 through 143
    Processing helix  chain '6' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 6 161 " --> pdb=" O   PRO 6 157 " (cutoff:3.500A)
    Processing helix  chain '6' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE 6 187 " --> pdb=" O   VAL 6 183 " (cutoff:3.500A)
    Processing helix  chain '6' and resid 204 through 222
    Processing helix  chain '7' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 7  28 " --> pdb=" O   GLU 7  24 " (cutoff:3.500A)
    Processing helix  chain '7' and resid 39 through 53
    Processing helix  chain '7' and resid 66 through 74
    Processing helix  chain '7' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU 7  79 " --> pdb=" O   SER 7  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 7  80 " --> pdb=" O   PHE 7  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '7' and resid 75 through 80'
    Processing helix  chain '7' and resid 91 through 101
    Processing helix  chain '7' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE 7 118 " --> pdb=" O   GLU 7 114 " (cutoff:3.500A)
    Processing helix  chain '7' and resid 132 through 143
    Processing helix  chain '7' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 7 161 " --> pdb=" O   PRO 7 157 " (cutoff:3.500A)
    Processing helix  chain '7' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE 7 187 " --> pdb=" O   VAL 7 183 " (cutoff:3.500A)
    Processing helix  chain '7' and resid 204 through 222
    Processing helix  chain '8' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 8  28 " --> pdb=" O   GLU 8  24 " (cutoff:3.500A)
    Processing helix  chain '8' and resid 39 through 53
    Processing helix  chain '8' and resid 66 through 74
    Processing helix  chain '8' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU 8  79 " --> pdb=" O   SER 8  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET 8  80 " --> pdb=" O   PHE 8  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '8' and resid 75 through 80'
    Processing helix  chain '8' and resid 91 through 101
    Processing helix  chain '8' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE 8 118 " --> pdb=" O   GLU 8 114 " (cutoff:3.500A)
    Processing helix  chain '8' and resid 132 through 143
    Processing helix  chain '8' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 8 161 " --> pdb=" O   PRO 8 157 " (cutoff:3.500A)
    Processing helix  chain '8' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE 8 187 " --> pdb=" O   VAL 8 183 " (cutoff:3.500A)
    Processing helix  chain '8' and resid 204 through 222
    Processing helix  chain '9' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS 9  28 " --> pdb=" O   GLU 9  24 " (cutoff:3.500A)
    Processing helix  chain '9' and resid 39 through 53
    Processing helix  chain '9' and resid 66 through 74
    Processing helix  chain '9' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU 9  79 " --> pdb=" O   SER 9  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET 9  80 " --> pdb=" O   PHE 9  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain '9' and resid 75 through 80'
    Processing helix  chain '9' and resid 91 through 101
    Processing helix  chain '9' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE 9 118 " --> pdb=" O   GLU 9 114 " (cutoff:3.500A)
    Processing helix  chain '9' and resid 132 through 143
    Processing helix  chain '9' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS 9 161 " --> pdb=" O   PRO 9 157 " (cutoff:3.500A)
    Processing helix  chain '9' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE 9 187 " --> pdb=" O   VAL 9 183 " (cutoff:3.500A)
    Processing helix  chain '9' and resid 204 through 222
    Processing helix  chain 'a' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS a  28 " --> pdb=" O   GLU a  24 " (cutoff:3.500A)
    Processing helix  chain 'a' and resid 39 through 53
    Processing helix  chain 'a' and resid 66 through 74
    Processing helix  chain 'a' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU a  79 " --> pdb=" O   SER a  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET a  80 " --> pdb=" O   PHE a  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'a' and resid 75 through 80'
    Processing helix  chain 'a' and resid 91 through 101
    Processing helix  chain 'a' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE a 118 " --> pdb=" O   GLU a 114 " (cutoff:3.500A)
    Processing helix  chain 'a' and resid 132 through 143
    Processing helix  chain 'a' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS a 161 " --> pdb=" O   PRO a 157 " (cutoff:3.500A)
    Processing helix  chain 'a' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE a 187 " --> pdb=" O   VAL a 183 " (cutoff:3.500A)
    Processing helix  chain 'a' and resid 204 through 222
    Processing helix  chain 'b' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS b  28 " --> pdb=" O   GLU b  24 " (cutoff:3.500A)
    Processing helix  chain 'b' and resid 39 through 53
    Processing helix  chain 'b' and resid 66 through 74
    Processing helix  chain 'b' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU b  79 " --> pdb=" O   SER b  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET b  80 " --> pdb=" O   PHE b  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'b' and resid 75 through 80'
    Processing helix  chain 'b' and resid 91 through 101
    Processing helix  chain 'b' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE b 118 " --> pdb=" O   GLU b 114 " (cutoff:3.500A)
    Processing helix  chain 'b' and resid 132 through 143
    Processing helix  chain 'b' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS b 161 " --> pdb=" O   PRO b 157 " (cutoff:3.500A)
    Processing helix  chain 'b' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE b 187 " --> pdb=" O   VAL b 183 " (cutoff:3.500A)
    Processing helix  chain 'b' and resid 204 through 222
    Processing helix  chain 'c' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS c  28 " --> pdb=" O   GLU c  24 " (cutoff:3.500A)
    Processing helix  chain 'c' and resid 39 through 53
    Processing helix  chain 'c' and resid 66 through 74
    Processing helix  chain 'c' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU c  79 " --> pdb=" O   SER c  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET c  80 " --> pdb=" O   PHE c  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'c' and resid 75 through 80'
    Processing helix  chain 'c' and resid 91 through 101
    Processing helix  chain 'c' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE c 118 " --> pdb=" O   GLU c 114 " (cutoff:3.500A)
    Processing helix  chain 'c' and resid 132 through 143
    Processing helix  chain 'c' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS c 161 " --> pdb=" O   PRO c 157 " (cutoff:3.500A)
    Processing helix  chain 'c' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE c 187 " --> pdb=" O   VAL c 183 " (cutoff:3.500A)
    Processing helix  chain 'c' and resid 204 through 222
    Processing helix  chain 'd' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS d  28 " --> pdb=" O   GLU d  24 " (cutoff:3.500A)
    Processing helix  chain 'd' and resid 39 through 53
    Processing helix  chain 'd' and resid 66 through 74
    Processing helix  chain 'd' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU d  79 " --> pdb=" O   SER d  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET d  80 " --> pdb=" O   PHE d  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'd' and resid 75 through 80'
    Processing helix  chain 'd' and resid 91 through 101
    Processing helix  chain 'd' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE d 118 " --> pdb=" O   GLU d 114 " (cutoff:3.500A)
    Processing helix  chain 'd' and resid 132 through 143
    Processing helix  chain 'd' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS d 161 " --> pdb=" O   PRO d 157 " (cutoff:3.500A)
    Processing helix  chain 'd' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE d 187 " --> pdb=" O   VAL d 183 " (cutoff:3.500A)
    Processing helix  chain 'd' and resid 204 through 222
    Processing helix  chain 'e' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS e  28 " --> pdb=" O   GLU e  24 " (cutoff:3.500A)
    Processing helix  chain 'e' and resid 39 through 53
    Processing helix  chain 'e' and resid 66 through 74
    Processing helix  chain 'e' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU e  79 " --> pdb=" O   SER e  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET e  80 " --> pdb=" O   PHE e  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'e' and resid 75 through 80'
    Processing helix  chain 'e' and resid 91 through 101
    Processing helix  chain 'e' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE e 118 " --> pdb=" O   GLU e 114 " (cutoff:3.500A)
    Processing helix  chain 'e' and resid 132 through 143
    Processing helix  chain 'e' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS e 161 " --> pdb=" O   PRO e 157 " (cutoff:3.500A)
    Processing helix  chain 'e' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE e 187 " --> pdb=" O   VAL e 183 " (cutoff:3.500A)
    Processing helix  chain 'e' and resid 204 through 222
    Processing helix  chain 'f' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS f  28 " --> pdb=" O   GLU f  24 " (cutoff:3.500A)
    Processing helix  chain 'f' and resid 39 through 53
    Processing helix  chain 'f' and resid 66 through 74
    Processing helix  chain 'f' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU f  79 " --> pdb=" O   SER f  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET f  80 " --> pdb=" O   PHE f  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'f' and resid 75 through 80'
    Processing helix  chain 'f' and resid 91 through 101
    Processing helix  chain 'f' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE f 118 " --> pdb=" O   GLU f 114 " (cutoff:3.500A)
    Processing helix  chain 'f' and resid 132 through 143
    Processing helix  chain 'f' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS f 161 " --> pdb=" O   PRO f 157 " (cutoff:3.500A)
    Processing helix  chain 'f' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE f 187 " --> pdb=" O   VAL f 183 " (cutoff:3.500A)
    Processing helix  chain 'f' and resid 204 through 222
    Processing helix  chain 'g' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS g  28 " --> pdb=" O   GLU g  24 " (cutoff:3.500A)
    Processing helix  chain 'g' and resid 39 through 53
    Processing helix  chain 'g' and resid 66 through 74
    Processing helix  chain 'g' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU g  79 " --> pdb=" O   SER g  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET g  80 " --> pdb=" O   PHE g  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'g' and resid 75 through 80'
    Processing helix  chain 'g' and resid 91 through 101
    Processing helix  chain 'g' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE g 118 " --> pdb=" O   GLU g 114 " (cutoff:3.500A)
    Processing helix  chain 'g' and resid 132 through 143
    Processing helix  chain 'g' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS g 161 " --> pdb=" O   PRO g 157 " (cutoff:3.500A)
    Processing helix  chain 'g' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE g 187 " --> pdb=" O   VAL g 183 " (cutoff:3.500A)
    Processing helix  chain 'g' and resid 204 through 222
    Processing helix  chain 'h' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS h  28 " --> pdb=" O   GLU h  24 " (cutoff:3.500A)
    Processing helix  chain 'h' and resid 39 through 53
    Processing helix  chain 'h' and resid 66 through 74
    Processing helix  chain 'h' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU h  79 " --> pdb=" O   SER h  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET h  80 " --> pdb=" O   PHE h  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'h' and resid 75 through 80'
    Processing helix  chain 'h' and resid 91 through 101
    Processing helix  chain 'h' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE h 118 " --> pdb=" O   GLU h 114 " (cutoff:3.500A)
    Processing helix  chain 'h' and resid 132 through 143
    Processing helix  chain 'h' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS h 161 " --> pdb=" O   PRO h 157 " (cutoff:3.500A)
    Processing helix  chain 'h' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE h 187 " --> pdb=" O   VAL h 183 " (cutoff:3.500A)
    Processing helix  chain 'h' and resid 204 through 222
    Processing helix  chain 'i' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS i  28 " --> pdb=" O   GLU i  24 " (cutoff:3.500A)
    Processing helix  chain 'i' and resid 39 through 53
    Processing helix  chain 'i' and resid 66 through 74
    Processing helix  chain 'i' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU i  79 " --> pdb=" O   SER i  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET i  80 " --> pdb=" O   PHE i  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'i' and resid 75 through 80'
    Processing helix  chain 'i' and resid 91 through 101
    Processing helix  chain 'i' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE i 118 " --> pdb=" O   GLU i 114 " (cutoff:3.500A)
    Processing helix  chain 'i' and resid 132 through 143
    Processing helix  chain 'i' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS i 161 " --> pdb=" O   PRO i 157 " (cutoff:3.500A)
    Processing helix  chain 'i' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE i 187 " --> pdb=" O   VAL i 183 " (cutoff:3.500A)
    Processing helix  chain 'i' and resid 204 through 222
    Processing helix  chain 'j' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS j  28 " --> pdb=" O   GLU j  24 " (cutoff:3.500A)
    Processing helix  chain 'j' and resid 39 through 53
    Processing helix  chain 'j' and resid 66 through 74
    Processing helix  chain 'j' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU j  79 " --> pdb=" O   SER j  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET j  80 " --> pdb=" O   PHE j  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'j' and resid 75 through 80'
    Processing helix  chain 'j' and resid 91 through 101
    Processing helix  chain 'j' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE j 118 " --> pdb=" O   GLU j 114 " (cutoff:3.500A)
    Processing helix  chain 'j' and resid 132 through 143
    Processing helix  chain 'j' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS j 161 " --> pdb=" O   PRO j 157 " (cutoff:3.500A)
    Processing helix  chain 'j' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE j 187 " --> pdb=" O   VAL j 183 " (cutoff:3.500A)
    Processing helix  chain 'j' and resid 204 through 222
    Processing helix  chain 'k' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS k  28 " --> pdb=" O   GLU k  24 " (cutoff:3.500A)
    Processing helix  chain 'k' and resid 39 through 53
    Processing helix  chain 'k' and resid 66 through 74
    Processing helix  chain 'k' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU k  79 " --> pdb=" O   SER k  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET k  80 " --> pdb=" O   PHE k  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'k' and resid 75 through 80'
    Processing helix  chain 'k' and resid 91 through 101
    Processing helix  chain 'k' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE k 118 " --> pdb=" O   GLU k 114 " (cutoff:3.500A)
    Processing helix  chain 'k' and resid 132 through 143
    Processing helix  chain 'k' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS k 161 " --> pdb=" O   PRO k 157 " (cutoff:3.500A)
    Processing helix  chain 'k' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE k 187 " --> pdb=" O   VAL k 183 " (cutoff:3.500A)
    Processing helix  chain 'k' and resid 204 through 222
    Processing helix  chain 'l' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS l  28 " --> pdb=" O   GLU l  24 " (cutoff:3.500A)
    Processing helix  chain 'l' and resid 39 through 53
    Processing helix  chain 'l' and resid 66 through 74
    Processing helix  chain 'l' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU l  79 " --> pdb=" O   SER l  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET l  80 " --> pdb=" O   PHE l  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'l' and resid 75 through 80'
    Processing helix  chain 'l' and resid 91 through 101
    Processing helix  chain 'l' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE l 118 " --> pdb=" O   GLU l 114 " (cutoff:3.500A)
    Processing helix  chain 'l' and resid 132 through 143
    Processing helix  chain 'l' and resid 157 through 164
      removed outlier: 3.708A  pdb=" N   LYS l 161 " --> pdb=" O   PRO l 157 " (cutoff:3.500A)
    Processing helix  chain 'l' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE l 187 " --> pdb=" O   VAL l 183 " (cutoff:3.500A)
    Processing helix  chain 'l' and resid 204 through 222
    Processing helix  chain 'm' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS m  28 " --> pdb=" O   GLU m  24 " (cutoff:3.500A)
    Processing helix  chain 'm' and resid 39 through 53
    Processing helix  chain 'm' and resid 66 through 74
    Processing helix  chain 'm' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU m  79 " --> pdb=" O   SER m  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET m  80 " --> pdb=" O   PHE m  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'm' and resid 75 through 80'
    Processing helix  chain 'm' and resid 91 through 101
    Processing helix  chain 'm' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE m 118 " --> pdb=" O   GLU m 114 " (cutoff:3.500A)
    Processing helix  chain 'm' and resid 132 through 143
    Processing helix  chain 'm' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS m 161 " --> pdb=" O   PRO m 157 " (cutoff:3.500A)
    Processing helix  chain 'm' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE m 187 " --> pdb=" O   VAL m 183 " (cutoff:3.500A)
    Processing helix  chain 'm' and resid 204 through 222
    Processing helix  chain 'n' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS n  28 " --> pdb=" O   GLU n  24 " (cutoff:3.500A)
    Processing helix  chain 'n' and resid 39 through 53
    Processing helix  chain 'n' and resid 66 through 74
    Processing helix  chain 'n' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU n  79 " --> pdb=" O   SER n  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET n  80 " --> pdb=" O   PHE n  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'n' and resid 75 through 80'
    Processing helix  chain 'n' and resid 91 through 101
    Processing helix  chain 'n' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE n 118 " --> pdb=" O   GLU n 114 " (cutoff:3.500A)
    Processing helix  chain 'n' and resid 132 through 143
    Processing helix  chain 'n' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS n 161 " --> pdb=" O   PRO n 157 " (cutoff:3.500A)
    Processing helix  chain 'n' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE n 187 " --> pdb=" O   VAL n 183 " (cutoff:3.500A)
    Processing helix  chain 'n' and resid 204 through 222
    Processing helix  chain 'o' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS o  28 " --> pdb=" O   GLU o  24 " (cutoff:3.500A)
    Processing helix  chain 'o' and resid 39 through 53
    Processing helix  chain 'o' and resid 66 through 74
    Processing helix  chain 'o' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU o  79 " --> pdb=" O   SER o  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET o  80 " --> pdb=" O   PHE o  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'o' and resid 75 through 80'
    Processing helix  chain 'o' and resid 91 through 101
    Processing helix  chain 'o' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE o 118 " --> pdb=" O   GLU o 114 " (cutoff:3.500A)
    Processing helix  chain 'o' and resid 132 through 143
    Processing helix  chain 'o' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS o 161 " --> pdb=" O   PRO o 157 " (cutoff:3.500A)
    Processing helix  chain 'o' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE o 187 " --> pdb=" O   VAL o 183 " (cutoff:3.500A)
    Processing helix  chain 'o' and resid 204 through 222
    Processing helix  chain 'p' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS p  28 " --> pdb=" O   GLU p  24 " (cutoff:3.500A)
    Processing helix  chain 'p' and resid 39 through 53
    Processing helix  chain 'p' and resid 66 through 74
    Processing helix  chain 'p' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU p  79 " --> pdb=" O   SER p  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET p  80 " --> pdb=" O   PHE p  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'p' and resid 75 through 80'
    Processing helix  chain 'p' and resid 91 through 101
    Processing helix  chain 'p' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE p 118 " --> pdb=" O   GLU p 114 " (cutoff:3.500A)
    Processing helix  chain 'p' and resid 132 through 143
    Processing helix  chain 'p' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS p 161 " --> pdb=" O   PRO p 157 " (cutoff:3.500A)
    Processing helix  chain 'p' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE p 187 " --> pdb=" O   VAL p 183 " (cutoff:3.500A)
    Processing helix  chain 'p' and resid 204 through 222
    Processing helix  chain 'q' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS q  28 " --> pdb=" O   GLU q  24 " (cutoff:3.500A)
    Processing helix  chain 'q' and resid 39 through 53
    Processing helix  chain 'q' and resid 66 through 74
    Processing helix  chain 'q' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU q  79 " --> pdb=" O   SER q  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET q  80 " --> pdb=" O   PHE q  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'q' and resid 75 through 80'
    Processing helix  chain 'q' and resid 91 through 101
    Processing helix  chain 'q' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE q 118 " --> pdb=" O   GLU q 114 " (cutoff:3.500A)
    Processing helix  chain 'q' and resid 132 through 143
    Processing helix  chain 'q' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS q 161 " --> pdb=" O   PRO q 157 " (cutoff:3.500A)
    Processing helix  chain 'q' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE q 187 " --> pdb=" O   VAL q 183 " (cutoff:3.500A)
    Processing helix  chain 'q' and resid 204 through 222
    Processing helix  chain 'r' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS r  28 " --> pdb=" O   GLU r  24 " (cutoff:3.500A)
    Processing helix  chain 'r' and resid 39 through 53
    Processing helix  chain 'r' and resid 66 through 74
    Processing helix  chain 'r' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU r  79 " --> pdb=" O   SER r  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET r  80 " --> pdb=" O   PHE r  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'r' and resid 75 through 80'
    Processing helix  chain 'r' and resid 91 through 101
    Processing helix  chain 'r' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE r 118 " --> pdb=" O   GLU r 114 " (cutoff:3.500A)
    Processing helix  chain 'r' and resid 132 through 143
    Processing helix  chain 'r' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS r 161 " --> pdb=" O   PRO r 157 " (cutoff:3.500A)
    Processing helix  chain 'r' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE r 187 " --> pdb=" O   VAL r 183 " (cutoff:3.500A)
    Processing helix  chain 'r' and resid 204 through 222
    Processing helix  chain 's' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS s  28 " --> pdb=" O   GLU s  24 " (cutoff:3.500A)
    Processing helix  chain 's' and resid 39 through 53
    Processing helix  chain 's' and resid 66 through 74
    Processing helix  chain 's' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU s  79 " --> pdb=" O   SER s  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET s  80 " --> pdb=" O   PHE s  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 's' and resid 75 through 80'
    Processing helix  chain 's' and resid 91 through 101
    Processing helix  chain 's' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE s 118 " --> pdb=" O   GLU s 114 " (cutoff:3.500A)
    Processing helix  chain 's' and resid 132 through 143
    Processing helix  chain 's' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS s 161 " --> pdb=" O   PRO s 157 " (cutoff:3.500A)
    Processing helix  chain 's' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE s 187 " --> pdb=" O   VAL s 183 " (cutoff:3.500A)
    Processing helix  chain 's' and resid 204 through 222
    Processing helix  chain 't' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS t  28 " --> pdb=" O   GLU t  24 " (cutoff:3.500A)
    Processing helix  chain 't' and resid 39 through 53
    Processing helix  chain 't' and resid 66 through 74
    Processing helix  chain 't' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU t  79 " --> pdb=" O   SER t  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET t  80 " --> pdb=" O   PHE t  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 't' and resid 75 through 80'
    Processing helix  chain 't' and resid 91 through 101
    Processing helix  chain 't' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE t 118 " --> pdb=" O   GLU t 114 " (cutoff:3.500A)
    Processing helix  chain 't' and resid 132 through 143
    Processing helix  chain 't' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS t 161 " --> pdb=" O   PRO t 157 " (cutoff:3.500A)
    Processing helix  chain 't' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE t 187 " --> pdb=" O   VAL t 183 " (cutoff:3.500A)
    Processing helix  chain 't' and resid 204 through 222
    Processing helix  chain 'u' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS u  28 " --> pdb=" O   GLU u  24 " (cutoff:3.500A)
    Processing helix  chain 'u' and resid 39 through 53
    Processing helix  chain 'u' and resid 66 through 74
    Processing helix  chain 'u' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU u  79 " --> pdb=" O   SER u  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET u  80 " --> pdb=" O   PHE u  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'u' and resid 75 through 80'
    Processing helix  chain 'u' and resid 91 through 101
    Processing helix  chain 'u' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE u 118 " --> pdb=" O   GLU u 114 " (cutoff:3.500A)
    Processing helix  chain 'u' and resid 132 through 143
    Processing helix  chain 'u' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS u 161 " --> pdb=" O   PRO u 157 " (cutoff:3.500A)
    Processing helix  chain 'u' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE u 187 " --> pdb=" O   VAL u 183 " (cutoff:3.500A)
    Processing helix  chain 'u' and resid 204 through 222
    Processing helix  chain 'v' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS v  28 " --> pdb=" O   GLU v  24 " (cutoff:3.500A)
    Processing helix  chain 'v' and resid 39 through 53
    Processing helix  chain 'v' and resid 66 through 74
    Processing helix  chain 'v' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU v  79 " --> pdb=" O   SER v  75 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   MET v  80 " --> pdb=" O   PHE v  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'v' and resid 75 through 80'
    Processing helix  chain 'v' and resid 91 through 101
    Processing helix  chain 'v' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE v 118 " --> pdb=" O   GLU v 114 " (cutoff:3.500A)
    Processing helix  chain 'v' and resid 132 through 143
    Processing helix  chain 'v' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS v 161 " --> pdb=" O   PRO v 157 " (cutoff:3.500A)
    Processing helix  chain 'v' and resid 182 through 190
      removed outlier: 3.769A  pdb=" N   PHE v 187 " --> pdb=" O   VAL v 183 " (cutoff:3.500A)
    Processing helix  chain 'v' and resid 204 through 222
    Processing helix  chain 'w' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS w  28 " --> pdb=" O   GLU w  24 " (cutoff:3.500A)
    Processing helix  chain 'w' and resid 39 through 53
    Processing helix  chain 'w' and resid 66 through 74
    Processing helix  chain 'w' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU w  79 " --> pdb=" O   SER w  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET w  80 " --> pdb=" O   PHE w  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'w' and resid 75 through 80'
    Processing helix  chain 'w' and resid 91 through 101
    Processing helix  chain 'w' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE w 118 " --> pdb=" O   GLU w 114 " (cutoff:3.500A)
    Processing helix  chain 'w' and resid 132 through 143
    Processing helix  chain 'w' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS w 161 " --> pdb=" O   PRO w 157 " (cutoff:3.500A)
    Processing helix  chain 'w' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE w 187 " --> pdb=" O   VAL w 183 " (cutoff:3.500A)
    Processing helix  chain 'w' and resid 204 through 222
    Processing helix  chain 'x' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS x  28 " --> pdb=" O   GLU x  24 " (cutoff:3.500A)
    Processing helix  chain 'x' and resid 39 through 53
    Processing helix  chain 'x' and resid 66 through 74
    Processing helix  chain 'x' and resid 75 through 80
      removed outlier: 4.300A  pdb=" N   GLU x  79 " --> pdb=" O   SER x  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET x  80 " --> pdb=" O   PHE x  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'x' and resid 75 through 80'
    Processing helix  chain 'x' and resid 91 through 101
    Processing helix  chain 'x' and resid 112 through 123
      removed outlier: 3.611A  pdb=" N   PHE x 118 " --> pdb=" O   GLU x 114 " (cutoff:3.500A)
    Processing helix  chain 'x' and resid 132 through 143
    Processing helix  chain 'x' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS x 161 " --> pdb=" O   PRO x 157 " (cutoff:3.500A)
    Processing helix  chain 'x' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE x 187 " --> pdb=" O   VAL x 183 " (cutoff:3.500A)
    Processing helix  chain 'x' and resid 204 through 222
    Processing helix  chain 'y' and resid 24 through 30
      removed outlier: 3.729A  pdb=" N   LYS y  28 " --> pdb=" O   GLU y  24 " (cutoff:3.500A)
    Processing helix  chain 'y' and resid 39 through 53
    Processing helix  chain 'y' and resid 66 through 74
    Processing helix  chain 'y' and resid 75 through 80
      removed outlier: 4.301A  pdb=" N   GLU y  79 " --> pdb=" O   SER y  75 " (cutoff:3.500A)
      removed outlier: 4.358A  pdb=" N   MET y  80 " --> pdb=" O   PHE y  76 " (cutoff:3.500A)
      No H-bonds generated for 'chain 'y' and resid 75 through 80'
    Processing helix  chain 'y' and resid 91 through 101
    Processing helix  chain 'y' and resid 112 through 123
      removed outlier: 3.610A  pdb=" N   PHE y 118 " --> pdb=" O   GLU y 114 " (cutoff:3.500A)
    Processing helix  chain 'y' and resid 132 through 143
    Processing helix  chain 'y' and resid 157 through 164
      removed outlier: 3.709A  pdb=" N   LYS y 161 " --> pdb=" O   PRO y 157 " (cutoff:3.500A)
    Processing helix  chain 'y' and resid 182 through 190
      removed outlier: 3.770A  pdb=" N   PHE y 187 " --> pdb=" O   VAL y 183 " (cutoff:3.500A)
    Processing helix  chain 'y' and resid 204 through 222
    Processing sheet with id=  1, first strand: chain 'A' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE A  31 " --> pdb=" O   LEU A  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU A  59 " --> pdb=" O   ILE A  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA A  33 " --> pdb=" O   GLU A  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR A  61 " --> pdb=" O   ALA A  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU A  35 " --> pdb=" O   THR A  61 " (cutoff:3.500A)
    Processing sheet with id=  2, first strand: chain 'A' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE A 106 " --> pdb=" O   MET A 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=  2
    Processing sheet with id=  3, first strand: chain 'A' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU A 147 " --> pdb=" O   VAL A 173 " (cutoff:3.500A)
    Processing sheet with id=  4, first strand: chain 'B' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE B  31 " --> pdb=" O   LEU B  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU B  59 " --> pdb=" O   ILE B  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA B  33 " --> pdb=" O   GLU B  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR B  61 " --> pdb=" O   ALA B  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU B  35 " --> pdb=" O   THR B  61 " (cutoff:3.500A)
    Processing sheet with id=  5, first strand: chain 'B' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE B 106 " --> pdb=" O   MET B 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=  5
    Processing sheet with id=  6, first strand: chain 'B' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU B 147 " --> pdb=" O   VAL B 173 " (cutoff:3.500A)
    Processing sheet with id=  7, first strand: chain 'C' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE C  31 " --> pdb=" O   LEU C  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU C  59 " --> pdb=" O   ILE C  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA C  33 " --> pdb=" O   GLU C  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR C  61 " --> pdb=" O   ALA C  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU C  35 " --> pdb=" O   THR C  61 " (cutoff:3.500A)
    Processing sheet with id=  8, first strand: chain 'C' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE C 106 " --> pdb=" O   MET C 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=  8
    Processing sheet with id=  9, first strand: chain 'C' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU C 147 " --> pdb=" O   VAL C 173 " (cutoff:3.500A)
    Processing sheet with id= 10, first strand: chain 'D' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE D  31 " --> pdb=" O   LEU D  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU D  59 " --> pdb=" O   ILE D  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA D  33 " --> pdb=" O   GLU D  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR D  61 " --> pdb=" O   ALA D  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU D  35 " --> pdb=" O   THR D  61 " (cutoff:3.500A)
    Processing sheet with id= 11, first strand: chain 'D' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE D 106 " --> pdb=" O   MET D 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 11
    Processing sheet with id= 12, first strand: chain 'D' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU D 147 " --> pdb=" O   VAL D 173 " (cutoff:3.500A)
    Processing sheet with id= 13, first strand: chain 'E' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE E  31 " --> pdb=" O   LEU E  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU E  59 " --> pdb=" O   ILE E  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA E  33 " --> pdb=" O   GLU E  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR E  61 " --> pdb=" O   ALA E  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU E  35 " --> pdb=" O   THR E  61 " (cutoff:3.500A)
    Processing sheet with id= 14, first strand: chain 'E' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE E 106 " --> pdb=" O   MET E 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 14
    Processing sheet with id= 15, first strand: chain 'E' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU E 147 " --> pdb=" O   VAL E 173 " (cutoff:3.500A)
    Processing sheet with id= 16, first strand: chain 'F' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE F  31 " --> pdb=" O   LEU F  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU F  59 " --> pdb=" O   ILE F  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA F  33 " --> pdb=" O   GLU F  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR F  61 " --> pdb=" O   ALA F  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU F  35 " --> pdb=" O   THR F  61 " (cutoff:3.500A)
    Processing sheet with id= 17, first strand: chain 'F' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE F 106 " --> pdb=" O   MET F 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 17
    Processing sheet with id= 18, first strand: chain 'F' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU F 147 " --> pdb=" O   VAL F 173 " (cutoff:3.500A)
    Processing sheet with id= 19, first strand: chain 'G' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE G  31 " --> pdb=" O   LEU G  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU G  59 " --> pdb=" O   ILE G  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA G  33 " --> pdb=" O   GLU G  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR G  61 " --> pdb=" O   ALA G  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU G  35 " --> pdb=" O   THR G  61 " (cutoff:3.500A)
    Processing sheet with id= 20, first strand: chain 'G' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE G 106 " --> pdb=" O   MET G 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 20
    Processing sheet with id= 21, first strand: chain 'G' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU G 147 " --> pdb=" O   VAL G 173 " (cutoff:3.500A)
    Processing sheet with id= 22, first strand: chain 'H' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE H  31 " --> pdb=" O   LEU H  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU H  59 " --> pdb=" O   ILE H  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA H  33 " --> pdb=" O   GLU H  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR H  61 " --> pdb=" O   ALA H  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU H  35 " --> pdb=" O   THR H  61 " (cutoff:3.500A)
    Processing sheet with id= 23, first strand: chain 'H' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE H 106 " --> pdb=" O   MET H 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 23
    Processing sheet with id= 24, first strand: chain 'H' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU H 147 " --> pdb=" O   VAL H 173 " (cutoff:3.500A)
    Processing sheet with id= 25, first strand: chain 'I' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE I  31 " --> pdb=" O   LEU I  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU I  59 " --> pdb=" O   ILE I  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA I  33 " --> pdb=" O   GLU I  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR I  61 " --> pdb=" O   ALA I  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU I  35 " --> pdb=" O   THR I  61 " (cutoff:3.500A)
    Processing sheet with id= 26, first strand: chain 'I' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE I 106 " --> pdb=" O   MET I 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 26
    Processing sheet with id= 27, first strand: chain 'I' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU I 147 " --> pdb=" O   VAL I 173 " (cutoff:3.500A)
    Processing sheet with id= 28, first strand: chain 'J' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE J  31 " --> pdb=" O   LEU J  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU J  59 " --> pdb=" O   ILE J  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA J  33 " --> pdb=" O   GLU J  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR J  61 " --> pdb=" O   ALA J  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU J  35 " --> pdb=" O   THR J  61 " (cutoff:3.500A)
    Processing sheet with id= 29, first strand: chain 'J' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE J 106 " --> pdb=" O   MET J 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 29
    Processing sheet with id= 30, first strand: chain 'J' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU J 147 " --> pdb=" O   VAL J 173 " (cutoff:3.500A)
    Processing sheet with id= 31, first strand: chain 'K' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE K  31 " --> pdb=" O   LEU K  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU K  59 " --> pdb=" O   ILE K  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA K  33 " --> pdb=" O   GLU K  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR K  61 " --> pdb=" O   ALA K  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU K  35 " --> pdb=" O   THR K  61 " (cutoff:3.500A)
    Processing sheet with id= 32, first strand: chain 'K' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE K 106 " --> pdb=" O   MET K 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 32
    Processing sheet with id= 33, first strand: chain 'K' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU K 147 " --> pdb=" O   VAL K 173 " (cutoff:3.500A)
    Processing sheet with id= 34, first strand: chain 'L' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE L  31 " --> pdb=" O   LEU L  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU L  59 " --> pdb=" O   ILE L  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA L  33 " --> pdb=" O   GLU L  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR L  61 " --> pdb=" O   ALA L  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU L  35 " --> pdb=" O   THR L  61 " (cutoff:3.500A)
    Processing sheet with id= 35, first strand: chain 'L' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE L 106 " --> pdb=" O   MET L 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 35
    Processing sheet with id= 36, first strand: chain 'L' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU L 147 " --> pdb=" O   VAL L 173 " (cutoff:3.500A)
    Processing sheet with id= 37, first strand: chain 'M' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE M  31 " --> pdb=" O   LEU M  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU M  59 " --> pdb=" O   ILE M  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA M  33 " --> pdb=" O   GLU M  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR M  61 " --> pdb=" O   ALA M  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU M  35 " --> pdb=" O   THR M  61 " (cutoff:3.500A)
    Processing sheet with id= 38, first strand: chain 'M' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE M 106 " --> pdb=" O   MET M 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 38
    Processing sheet with id= 39, first strand: chain 'M' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU M 147 " --> pdb=" O   VAL M 173 " (cutoff:3.500A)
    Processing sheet with id= 40, first strand: chain 'N' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE N  31 " --> pdb=" O   LEU N  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU N  59 " --> pdb=" O   ILE N  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA N  33 " --> pdb=" O   GLU N  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR N  61 " --> pdb=" O   ALA N  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU N  35 " --> pdb=" O   THR N  61 " (cutoff:3.500A)
    Processing sheet with id= 41, first strand: chain 'N' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE N 106 " --> pdb=" O   MET N 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 41
    Processing sheet with id= 42, first strand: chain 'N' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU N 147 " --> pdb=" O   VAL N 173 " (cutoff:3.500A)
    Processing sheet with id= 43, first strand: chain 'O' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE O  31 " --> pdb=" O   LEU O  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU O  59 " --> pdb=" O   ILE O  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA O  33 " --> pdb=" O   GLU O  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR O  61 " --> pdb=" O   ALA O  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU O  35 " --> pdb=" O   THR O  61 " (cutoff:3.500A)
    Processing sheet with id= 44, first strand: chain 'O' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE O 106 " --> pdb=" O   MET O 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 44
    Processing sheet with id= 45, first strand: chain 'O' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU O 147 " --> pdb=" O   VAL O 173 " (cutoff:3.500A)
    Processing sheet with id= 46, first strand: chain 'P' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE P  31 " --> pdb=" O   LEU P  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU P  59 " --> pdb=" O   ILE P  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA P  33 " --> pdb=" O   GLU P  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR P  61 " --> pdb=" O   ALA P  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU P  35 " --> pdb=" O   THR P  61 " (cutoff:3.500A)
    Processing sheet with id= 47, first strand: chain 'P' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE P 106 " --> pdb=" O   MET P 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 47
    Processing sheet with id= 48, first strand: chain 'P' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU P 147 " --> pdb=" O   VAL P 173 " (cutoff:3.500A)
    Processing sheet with id= 49, first strand: chain 'Q' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE Q  31 " --> pdb=" O   LEU Q  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU Q  59 " --> pdb=" O   ILE Q  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA Q  33 " --> pdb=" O   GLU Q  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR Q  61 " --> pdb=" O   ALA Q  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU Q  35 " --> pdb=" O   THR Q  61 " (cutoff:3.500A)
    Processing sheet with id= 50, first strand: chain 'Q' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE Q 106 " --> pdb=" O   MET Q 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 50
    Processing sheet with id= 51, first strand: chain 'Q' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU Q 147 " --> pdb=" O   VAL Q 173 " (cutoff:3.500A)
    Processing sheet with id= 52, first strand: chain 'R' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE R  31 " --> pdb=" O   LEU R  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU R  59 " --> pdb=" O   ILE R  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA R  33 " --> pdb=" O   GLU R  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR R  61 " --> pdb=" O   ALA R  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU R  35 " --> pdb=" O   THR R  61 " (cutoff:3.500A)
    Processing sheet with id= 53, first strand: chain 'R' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE R 106 " --> pdb=" O   MET R 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 53
    Processing sheet with id= 54, first strand: chain 'R' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU R 147 " --> pdb=" O   VAL R 173 " (cutoff:3.500A)
    Processing sheet with id= 55, first strand: chain 'S' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE S  31 " --> pdb=" O   LEU S  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU S  59 " --> pdb=" O   ILE S  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA S  33 " --> pdb=" O   GLU S  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR S  61 " --> pdb=" O   ALA S  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU S  35 " --> pdb=" O   THR S  61 " (cutoff:3.500A)
    Processing sheet with id= 56, first strand: chain 'S' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE S 106 " --> pdb=" O   MET S 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 56
    Processing sheet with id= 57, first strand: chain 'S' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU S 147 " --> pdb=" O   VAL S 173 " (cutoff:3.500A)
    Processing sheet with id= 58, first strand: chain 'T' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE T  31 " --> pdb=" O   LEU T  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU T  59 " --> pdb=" O   ILE T  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA T  33 " --> pdb=" O   GLU T  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR T  61 " --> pdb=" O   ALA T  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU T  35 " --> pdb=" O   THR T  61 " (cutoff:3.500A)
    Processing sheet with id= 59, first strand: chain 'T' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE T 106 " --> pdb=" O   MET T 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 59
    Processing sheet with id= 60, first strand: chain 'T' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU T 147 " --> pdb=" O   VAL T 173 " (cutoff:3.500A)
    Processing sheet with id= 61, first strand: chain 'U' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE U  31 " --> pdb=" O   LEU U  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU U  59 " --> pdb=" O   ILE U  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA U  33 " --> pdb=" O   GLU U  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR U  61 " --> pdb=" O   ALA U  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU U  35 " --> pdb=" O   THR U  61 " (cutoff:3.500A)
    Processing sheet with id= 62, first strand: chain 'U' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE U 106 " --> pdb=" O   MET U 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 62
    Processing sheet with id= 63, first strand: chain 'U' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU U 147 " --> pdb=" O   VAL U 173 " (cutoff:3.500A)
    Processing sheet with id= 64, first strand: chain 'V' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE V  31 " --> pdb=" O   LEU V  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU V  59 " --> pdb=" O   ILE V  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA V  33 " --> pdb=" O   GLU V  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR V  61 " --> pdb=" O   ALA V  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU V  35 " --> pdb=" O   THR V  61 " (cutoff:3.500A)
    Processing sheet with id= 65, first strand: chain 'V' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE V 106 " --> pdb=" O   MET V 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 65
    Processing sheet with id= 66, first strand: chain 'V' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU V 147 " --> pdb=" O   VAL V 173 " (cutoff:3.500A)
    Processing sheet with id= 67, first strand: chain 'W' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE W  31 " --> pdb=" O   LEU W  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU W  59 " --> pdb=" O   ILE W  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA W  33 " --> pdb=" O   GLU W  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR W  61 " --> pdb=" O   ALA W  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU W  35 " --> pdb=" O   THR W  61 " (cutoff:3.500A)
    Processing sheet with id= 68, first strand: chain 'W' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE W 106 " --> pdb=" O   MET W 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 68
    Processing sheet with id= 69, first strand: chain 'W' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU W 147 " --> pdb=" O   VAL W 173 " (cutoff:3.500A)
    Processing sheet with id= 70, first strand: chain 'X' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE X  31 " --> pdb=" O   LEU X  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU X  59 " --> pdb=" O   ILE X  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA X  33 " --> pdb=" O   GLU X  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR X  61 " --> pdb=" O   ALA X  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU X  35 " --> pdb=" O   THR X  61 " (cutoff:3.500A)
    Processing sheet with id= 71, first strand: chain 'X' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE X 106 " --> pdb=" O   MET X 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 71
    Processing sheet with id= 72, first strand: chain 'X' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU X 147 " --> pdb=" O   VAL X 173 " (cutoff:3.500A)
    Processing sheet with id= 73, first strand: chain 'Y' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE Y  31 " --> pdb=" O   LEU Y  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU Y  59 " --> pdb=" O   ILE Y  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA Y  33 " --> pdb=" O   GLU Y  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR Y  61 " --> pdb=" O   ALA Y  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU Y  35 " --> pdb=" O   THR Y  61 " (cutoff:3.500A)
    Processing sheet with id= 74, first strand: chain 'Y' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE Y 106 " --> pdb=" O   MET Y 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 74
    Processing sheet with id= 75, first strand: chain 'Y' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU Y 147 " --> pdb=" O   VAL Y 173 " (cutoff:3.500A)
    Processing sheet with id= 76, first strand: chain 'Z' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE Z  31 " --> pdb=" O   LEU Z  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU Z  59 " --> pdb=" O   ILE Z  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA Z  33 " --> pdb=" O   GLU Z  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR Z  61 " --> pdb=" O   ALA Z  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU Z  35 " --> pdb=" O   THR Z  61 " (cutoff:3.500A)
    Processing sheet with id= 77, first strand: chain 'Z' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE Z 106 " --> pdb=" O   MET Z 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 77
    Processing sheet with id= 78, first strand: chain 'Z' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU Z 147 " --> pdb=" O   VAL Z 173 " (cutoff:3.500A)
    Processing sheet with id= 79, first strand: chain '0' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 0  31 " --> pdb=" O   LEU 0  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 0  59 " --> pdb=" O   ILE 0  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA 0  33 " --> pdb=" O   GLU 0  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 0  61 " --> pdb=" O   ALA 0  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 0  35 " --> pdb=" O   THR 0  61 " (cutoff:3.500A)
    Processing sheet with id= 80, first strand: chain '0' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE 0 106 " --> pdb=" O   MET 0 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 80
    Processing sheet with id= 81, first strand: chain '0' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 0 147 " --> pdb=" O   VAL 0 173 " (cutoff:3.500A)
    Processing sheet with id= 82, first strand: chain '1' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 1  31 " --> pdb=" O   LEU 1  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 1  59 " --> pdb=" O   ILE 1  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA 1  33 " --> pdb=" O   GLU 1  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR 1  61 " --> pdb=" O   ALA 1  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 1  35 " --> pdb=" O   THR 1  61 " (cutoff:3.500A)
    Processing sheet with id= 83, first strand: chain '1' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE 1 106 " --> pdb=" O   MET 1 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 83
    Processing sheet with id= 84, first strand: chain '1' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 1 147 " --> pdb=" O   VAL 1 173 " (cutoff:3.500A)
    Processing sheet with id= 85, first strand: chain '2' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 2  31 " --> pdb=" O   LEU 2  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 2  59 " --> pdb=" O   ILE 2  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA 2  33 " --> pdb=" O   GLU 2  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 2  61 " --> pdb=" O   ALA 2  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 2  35 " --> pdb=" O   THR 2  61 " (cutoff:3.500A)
    Processing sheet with id= 86, first strand: chain '2' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE 2 106 " --> pdb=" O   MET 2 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 86
    Processing sheet with id= 87, first strand: chain '2' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 2 147 " --> pdb=" O   VAL 2 173 " (cutoff:3.500A)
    Processing sheet with id= 88, first strand: chain '3' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 3  31 " --> pdb=" O   LEU 3  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 3  59 " --> pdb=" O   ILE 3  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA 3  33 " --> pdb=" O   GLU 3  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 3  61 " --> pdb=" O   ALA 3  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 3  35 " --> pdb=" O   THR 3  61 " (cutoff:3.500A)
    Processing sheet with id= 89, first strand: chain '3' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE 3 106 " --> pdb=" O   MET 3 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 89
    Processing sheet with id= 90, first strand: chain '3' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 3 147 " --> pdb=" O   VAL 3 173 " (cutoff:3.500A)
    Processing sheet with id= 91, first strand: chain '4' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 4  31 " --> pdb=" O   LEU 4  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU 4  59 " --> pdb=" O   ILE 4  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA 4  33 " --> pdb=" O   GLU 4  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 4  61 " --> pdb=" O   ALA 4  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 4  35 " --> pdb=" O   THR 4  61 " (cutoff:3.500A)
    Processing sheet with id= 92, first strand: chain '4' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE 4 106 " --> pdb=" O   MET 4 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 92
    Processing sheet with id= 93, first strand: chain '4' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU 4 147 " --> pdb=" O   VAL 4 173 " (cutoff:3.500A)
    Processing sheet with id= 94, first strand: chain '5' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 5  31 " --> pdb=" O   LEU 5  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 5  59 " --> pdb=" O   ILE 5  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA 5  33 " --> pdb=" O   GLU 5  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 5  61 " --> pdb=" O   ALA 5  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 5  35 " --> pdb=" O   THR 5  61 " (cutoff:3.500A)
    Processing sheet with id= 95, first strand: chain '5' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE 5 106 " --> pdb=" O   MET 5 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 95
    Processing sheet with id= 96, first strand: chain '5' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 5 147 " --> pdb=" O   VAL 5 173 " (cutoff:3.500A)
    Processing sheet with id= 97, first strand: chain '6' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 6  31 " --> pdb=" O   LEU 6  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 6  59 " --> pdb=" O   ILE 6  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA 6  33 " --> pdb=" O   GLU 6  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 6  61 " --> pdb=" O   ALA 6  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 6  35 " --> pdb=" O   THR 6  61 " (cutoff:3.500A)
    Processing sheet with id= 98, first strand: chain '6' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE 6 106 " --> pdb=" O   MET 6 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id= 98
    Processing sheet with id= 99, first strand: chain '6' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 6 147 " --> pdb=" O   VAL 6 173 " (cutoff:3.500A)
    Processing sheet with id=100, first strand: chain '7' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 7  31 " --> pdb=" O   LEU 7  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU 7  59 " --> pdb=" O   ILE 7  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA 7  33 " --> pdb=" O   GLU 7  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 7  61 " --> pdb=" O   ALA 7  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 7  35 " --> pdb=" O   THR 7  61 " (cutoff:3.500A)
    Processing sheet with id=101, first strand: chain '7' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE 7 106 " --> pdb=" O   MET 7 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=101
    Processing sheet with id=102, first strand: chain '7' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU 7 147 " --> pdb=" O   VAL 7 173 " (cutoff:3.500A)
    Processing sheet with id=103, first strand: chain '8' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 8  31 " --> pdb=" O   LEU 8  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 8  59 " --> pdb=" O   ILE 8  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA 8  33 " --> pdb=" O   GLU 8  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR 8  61 " --> pdb=" O   ALA 8  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 8  35 " --> pdb=" O   THR 8  61 " (cutoff:3.500A)
    Processing sheet with id=104, first strand: chain '8' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE 8 106 " --> pdb=" O   MET 8 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=104
    Processing sheet with id=105, first strand: chain '8' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 8 147 " --> pdb=" O   VAL 8 173 " (cutoff:3.500A)
    Processing sheet with id=106, first strand: chain '9' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE 9  31 " --> pdb=" O   LEU 9  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU 9  59 " --> pdb=" O   ILE 9  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA 9  33 " --> pdb=" O   GLU 9  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR 9  61 " --> pdb=" O   ALA 9  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU 9  35 " --> pdb=" O   THR 9  61 " (cutoff:3.500A)
    Processing sheet with id=107, first strand: chain '9' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE 9 106 " --> pdb=" O   MET 9 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=107
    Processing sheet with id=108, first strand: chain '9' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU 9 147 " --> pdb=" O   VAL 9 173 " (cutoff:3.500A)
    Processing sheet with id=109, first strand: chain 'a' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE a  31 " --> pdb=" O   LEU a  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU a  59 " --> pdb=" O   ILE a  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA a  33 " --> pdb=" O   GLU a  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR a  61 " --> pdb=" O   ALA a  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU a  35 " --> pdb=" O   THR a  61 " (cutoff:3.500A)
    Processing sheet with id=110, first strand: chain 'a' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE a 106 " --> pdb=" O   MET a 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=110
    Processing sheet with id=111, first strand: chain 'a' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU a 147 " --> pdb=" O   VAL a 173 " (cutoff:3.500A)
    Processing sheet with id=112, first strand: chain 'b' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE b  31 " --> pdb=" O   LEU b  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU b  59 " --> pdb=" O   ILE b  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA b  33 " --> pdb=" O   GLU b  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR b  61 " --> pdb=" O   ALA b  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU b  35 " --> pdb=" O   THR b  61 " (cutoff:3.500A)
    Processing sheet with id=113, first strand: chain 'b' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE b 106 " --> pdb=" O   MET b 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=113
    Processing sheet with id=114, first strand: chain 'b' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU b 147 " --> pdb=" O   VAL b 173 " (cutoff:3.500A)
    Processing sheet with id=115, first strand: chain 'c' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE c  31 " --> pdb=" O   LEU c  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU c  59 " --> pdb=" O   ILE c  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA c  33 " --> pdb=" O   GLU c  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR c  61 " --> pdb=" O   ALA c  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU c  35 " --> pdb=" O   THR c  61 " (cutoff:3.500A)
    Processing sheet with id=116, first strand: chain 'c' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE c 106 " --> pdb=" O   MET c 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=116
    Processing sheet with id=117, first strand: chain 'c' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU c 147 " --> pdb=" O   VAL c 173 " (cutoff:3.500A)
    Processing sheet with id=118, first strand: chain 'd' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE d  31 " --> pdb=" O   LEU d  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU d  59 " --> pdb=" O   ILE d  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA d  33 " --> pdb=" O   GLU d  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR d  61 " --> pdb=" O   ALA d  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU d  35 " --> pdb=" O   THR d  61 " (cutoff:3.500A)
    Processing sheet with id=119, first strand: chain 'd' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE d 106 " --> pdb=" O   MET d 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=119
    Processing sheet with id=120, first strand: chain 'd' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU d 147 " --> pdb=" O   VAL d 173 " (cutoff:3.500A)
    Processing sheet with id=121, first strand: chain 'e' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE e  31 " --> pdb=" O   LEU e  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU e  59 " --> pdb=" O   ILE e  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA e  33 " --> pdb=" O   GLU e  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR e  61 " --> pdb=" O   ALA e  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU e  35 " --> pdb=" O   THR e  61 " (cutoff:3.500A)
    Processing sheet with id=122, first strand: chain 'e' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE e 106 " --> pdb=" O   MET e 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=122
    Processing sheet with id=123, first strand: chain 'e' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU e 147 " --> pdb=" O   VAL e 173 " (cutoff:3.500A)
    Processing sheet with id=124, first strand: chain 'f' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE f  31 " --> pdb=" O   LEU f  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU f  59 " --> pdb=" O   ILE f  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA f  33 " --> pdb=" O   GLU f  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR f  61 " --> pdb=" O   ALA f  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU f  35 " --> pdb=" O   THR f  61 " (cutoff:3.500A)
    Processing sheet with id=125, first strand: chain 'f' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE f 106 " --> pdb=" O   MET f 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=125
    Processing sheet with id=126, first strand: chain 'f' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU f 147 " --> pdb=" O   VAL f 173 " (cutoff:3.500A)
    Processing sheet with id=127, first strand: chain 'g' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE g  31 " --> pdb=" O   LEU g  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU g  59 " --> pdb=" O   ILE g  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA g  33 " --> pdb=" O   GLU g  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR g  61 " --> pdb=" O   ALA g  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU g  35 " --> pdb=" O   THR g  61 " (cutoff:3.500A)
    Processing sheet with id=128, first strand: chain 'g' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE g 106 " --> pdb=" O   MET g 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=128
    Processing sheet with id=129, first strand: chain 'g' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU g 147 " --> pdb=" O   VAL g 173 " (cutoff:3.500A)
    Processing sheet with id=130, first strand: chain 'h' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE h  31 " --> pdb=" O   LEU h  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU h  59 " --> pdb=" O   ILE h  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA h  33 " --> pdb=" O   GLU h  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR h  61 " --> pdb=" O   ALA h  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU h  35 " --> pdb=" O   THR h  61 " (cutoff:3.500A)
    Processing sheet with id=131, first strand: chain 'h' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE h 106 " --> pdb=" O   MET h 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=131
    Processing sheet with id=132, first strand: chain 'h' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU h 147 " --> pdb=" O   VAL h 173 " (cutoff:3.500A)
    Processing sheet with id=133, first strand: chain 'i' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE i  31 " --> pdb=" O   LEU i  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU i  59 " --> pdb=" O   ILE i  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA i  33 " --> pdb=" O   GLU i  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR i  61 " --> pdb=" O   ALA i  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU i  35 " --> pdb=" O   THR i  61 " (cutoff:3.500A)
    Processing sheet with id=134, first strand: chain 'i' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE i 106 " --> pdb=" O   MET i 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=134
    Processing sheet with id=135, first strand: chain 'i' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU i 147 " --> pdb=" O   VAL i 173 " (cutoff:3.500A)
    Processing sheet with id=136, first strand: chain 'j' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE j  31 " --> pdb=" O   LEU j  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU j  59 " --> pdb=" O   ILE j  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA j  33 " --> pdb=" O   GLU j  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR j  61 " --> pdb=" O   ALA j  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU j  35 " --> pdb=" O   THR j  61 " (cutoff:3.500A)
    Processing sheet with id=137, first strand: chain 'j' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE j 106 " --> pdb=" O   MET j 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=137
    Processing sheet with id=138, first strand: chain 'j' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU j 147 " --> pdb=" O   VAL j 173 " (cutoff:3.500A)
    Processing sheet with id=139, first strand: chain 'k' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE k  31 " --> pdb=" O   LEU k  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU k  59 " --> pdb=" O   ILE k  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA k  33 " --> pdb=" O   GLU k  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR k  61 " --> pdb=" O   ALA k  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU k  35 " --> pdb=" O   THR k  61 " (cutoff:3.500A)
    Processing sheet with id=140, first strand: chain 'k' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE k 106 " --> pdb=" O   MET k 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=140
    Processing sheet with id=141, first strand: chain 'k' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU k 147 " --> pdb=" O   VAL k 173 " (cutoff:3.500A)
    Processing sheet with id=142, first strand: chain 'l' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE l  31 " --> pdb=" O   LEU l  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU l  59 " --> pdb=" O   ILE l  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA l  33 " --> pdb=" O   GLU l  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR l  61 " --> pdb=" O   ALA l  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU l  35 " --> pdb=" O   THR l  61 " (cutoff:3.500A)
    Processing sheet with id=143, first strand: chain 'l' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE l 106 " --> pdb=" O   MET l 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=143
    Processing sheet with id=144, first strand: chain 'l' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU l 147 " --> pdb=" O   VAL l 173 " (cutoff:3.500A)
    Processing sheet with id=145, first strand: chain 'm' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE m  31 " --> pdb=" O   LEU m  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU m  59 " --> pdb=" O   ILE m  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA m  33 " --> pdb=" O   GLU m  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR m  61 " --> pdb=" O   ALA m  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU m  35 " --> pdb=" O   THR m  61 " (cutoff:3.500A)
    Processing sheet with id=146, first strand: chain 'm' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE m 106 " --> pdb=" O   MET m 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=146
    Processing sheet with id=147, first strand: chain 'm' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU m 147 " --> pdb=" O   VAL m 173 " (cutoff:3.500A)
    Processing sheet with id=148, first strand: chain 'n' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE n  31 " --> pdb=" O   LEU n  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU n  59 " --> pdb=" O   ILE n  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA n  33 " --> pdb=" O   GLU n  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR n  61 " --> pdb=" O   ALA n  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU n  35 " --> pdb=" O   THR n  61 " (cutoff:3.500A)
    Processing sheet with id=149, first strand: chain 'n' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE n 106 " --> pdb=" O   MET n 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=149
    Processing sheet with id=150, first strand: chain 'n' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU n 147 " --> pdb=" O   VAL n 173 " (cutoff:3.500A)
    Processing sheet with id=151, first strand: chain 'o' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE o  31 " --> pdb=" O   LEU o  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU o  59 " --> pdb=" O   ILE o  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA o  33 " --> pdb=" O   GLU o  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR o  61 " --> pdb=" O   ALA o  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU o  35 " --> pdb=" O   THR o  61 " (cutoff:3.500A)
    Processing sheet with id=152, first strand: chain 'o' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE o 106 " --> pdb=" O   MET o 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=152
    Processing sheet with id=153, first strand: chain 'o' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU o 147 " --> pdb=" O   VAL o 173 " (cutoff:3.500A)
    Processing sheet with id=154, first strand: chain 'p' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE p  31 " --> pdb=" O   LEU p  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU p  59 " --> pdb=" O   ILE p  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA p  33 " --> pdb=" O   GLU p  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR p  61 " --> pdb=" O   ALA p  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU p  35 " --> pdb=" O   THR p  61 " (cutoff:3.500A)
    Processing sheet with id=155, first strand: chain 'p' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE p 106 " --> pdb=" O   MET p 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=155
    Processing sheet with id=156, first strand: chain 'p' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU p 147 " --> pdb=" O   VAL p 173 " (cutoff:3.500A)
    Processing sheet with id=157, first strand: chain 'q' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE q  31 " --> pdb=" O   LEU q  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU q  59 " --> pdb=" O   ILE q  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA q  33 " --> pdb=" O   GLU q  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR q  61 " --> pdb=" O   ALA q  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU q  35 " --> pdb=" O   THR q  61 " (cutoff:3.500A)
    Processing sheet with id=158, first strand: chain 'q' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE q 106 " --> pdb=" O   MET q 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=158
    Processing sheet with id=159, first strand: chain 'q' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU q 147 " --> pdb=" O   VAL q 173 " (cutoff:3.500A)
    Processing sheet with id=160, first strand: chain 'r' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE r  31 " --> pdb=" O   LEU r  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU r  59 " --> pdb=" O   ILE r  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA r  33 " --> pdb=" O   GLU r  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR r  61 " --> pdb=" O   ALA r  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU r  35 " --> pdb=" O   THR r  61 " (cutoff:3.500A)
    Processing sheet with id=161, first strand: chain 'r' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE r 106 " --> pdb=" O   MET r 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=161
    Processing sheet with id=162, first strand: chain 'r' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU r 147 " --> pdb=" O   VAL r 173 " (cutoff:3.500A)
    Processing sheet with id=163, first strand: chain 's' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE s  31 " --> pdb=" O   LEU s  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU s  59 " --> pdb=" O   ILE s  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA s  33 " --> pdb=" O   GLU s  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR s  61 " --> pdb=" O   ALA s  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU s  35 " --> pdb=" O   THR s  61 " (cutoff:3.500A)
    Processing sheet with id=164, first strand: chain 's' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE s 106 " --> pdb=" O   MET s 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=164
    Processing sheet with id=165, first strand: chain 's' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU s 147 " --> pdb=" O   VAL s 173 " (cutoff:3.500A)
    Processing sheet with id=166, first strand: chain 't' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE t  31 " --> pdb=" O   LEU t  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU t  59 " --> pdb=" O   ILE t  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA t  33 " --> pdb=" O   GLU t  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR t  61 " --> pdb=" O   ALA t  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU t  35 " --> pdb=" O   THR t  61 " (cutoff:3.500A)
    Processing sheet with id=167, first strand: chain 't' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE t 106 " --> pdb=" O   MET t 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=167
    Processing sheet with id=168, first strand: chain 't' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU t 147 " --> pdb=" O   VAL t 173 " (cutoff:3.500A)
    Processing sheet with id=169, first strand: chain 'u' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE u  31 " --> pdb=" O   LEU u  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU u  59 " --> pdb=" O   ILE u  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA u  33 " --> pdb=" O   GLU u  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR u  61 " --> pdb=" O   ALA u  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU u  35 " --> pdb=" O   THR u  61 " (cutoff:3.500A)
    Processing sheet with id=170, first strand: chain 'u' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE u 106 " --> pdb=" O   MET u 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=170
    Processing sheet with id=171, first strand: chain 'u' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU u 147 " --> pdb=" O   VAL u 173 " (cutoff:3.500A)
    Processing sheet with id=172, first strand: chain 'v' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE v  31 " --> pdb=" O   LEU v  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU v  59 " --> pdb=" O   ILE v  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA v  33 " --> pdb=" O   GLU v  59 " (cutoff:3.500A)
      removed outlier: 6.542A  pdb=" N   THR v  61 " --> pdb=" O   ALA v  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU v  35 " --> pdb=" O   THR v  61 " (cutoff:3.500A)
    Processing sheet with id=173, first strand: chain 'v' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE v 106 " --> pdb=" O   MET v 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=173
    Processing sheet with id=174, first strand: chain 'v' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU v 147 " --> pdb=" O   VAL v 173 " (cutoff:3.500A)
    Processing sheet with id=175, first strand: chain 'w' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE w  31 " --> pdb=" O   LEU w  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU w  59 " --> pdb=" O   ILE w  31 " (cutoff:3.500A)
      removed outlier: 5.833A  pdb=" N   ALA w  33 " --> pdb=" O   GLU w  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR w  61 " --> pdb=" O   ALA w  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU w  35 " --> pdb=" O   THR w  61 " (cutoff:3.500A)
    Processing sheet with id=176, first strand: chain 'w' and resid 105 through 107
      removed outlier: 6.588A  pdb=" N   ILE w 106 " --> pdb=" O   MET w 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=176
    Processing sheet with id=177, first strand: chain 'w' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU w 147 " --> pdb=" O   VAL w 173 " (cutoff:3.500A)
    Processing sheet with id=178, first strand: chain 'x' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE x  31 " --> pdb=" O   LEU x  57 " (cutoff:3.500A)
      removed outlier: 7.580A  pdb=" N   GLU x  59 " --> pdb=" O   ILE x  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA x  33 " --> pdb=" O   GLU x  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR x  61 " --> pdb=" O   ALA x  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU x  35 " --> pdb=" O   THR x  61 " (cutoff:3.500A)
    Processing sheet with id=179, first strand: chain 'x' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE x 106 " --> pdb=" O   MET x 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=179
    Processing sheet with id=180, first strand: chain 'x' and resid 129 through 130
      removed outlier: 6.767A  pdb=" N   LEU x 147 " --> pdb=" O   VAL x 173 " (cutoff:3.500A)
    Processing sheet with id=181, first strand: chain 'y' and resid 83 through 87
      removed outlier: 6.745A  pdb=" N   ILE y  31 " --> pdb=" O   LEU y  57 " (cutoff:3.500A)
      removed outlier: 7.579A  pdb=" N   GLU y  59 " --> pdb=" O   ILE y  31 " (cutoff:3.500A)
      removed outlier: 5.834A  pdb=" N   ALA y  33 " --> pdb=" O   GLU y  59 " (cutoff:3.500A)
      removed outlier: 6.541A  pdb=" N   THR y  61 " --> pdb=" O   ALA y  33 " (cutoff:3.500A)
      removed outlier: 7.289A  pdb=" N   LEU y  35 " --> pdb=" O   THR y  61 " (cutoff:3.500A)
    Processing sheet with id=182, first strand: chain 'y' and resid 105 through 107
      removed outlier: 6.589A  pdb=" N   ILE y 106 " --> pdb=" O   MET y 127 " (cutoff:3.500A)
  No H-bonds generated for sheet with id=182
    Processing sheet with id=183, first strand: chain 'y' and resid 129 through 130
      removed outlier: 6.766A  pdb=" N   LEU y 147 " --> pdb=" O   VAL y 173 " (cutoff:3.500A)

    4270 hydrogen bonds defined for protein.
    12810 hydrogen bond angles defined for protein.
    Restraints generated for nucleic acids:
      0 hydrogen bonds
      0 hydrogen bond angles
      0 basepair planarities
      0 basepair parallelities
      0 stacking parallelities
  Total time for adding SS restraints: 47.93

  Time building geometry restraints manager: 34.41 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        1.23 -     1.34: 29158
        1.34 -     1.46: 17296
        1.46 -     1.58: 46937
        1.58 -     1.69: 0
        1.69 -     1.81: 976
  Bond restraints: 94367
  Sorted by residual:
  bond pdb=" CB  PRO l 128 "
       pdb=" CG  PRO l 128 "
    ideal  model  delta    sigma   weight residual
    1.492  1.530 -0.038 5.00e-02 4.00e+02 5.90e-01
  bond pdb=" CB  PRO 4 128 "
       pdb=" CG  PRO 4 128 "
    ideal  model  delta    sigma   weight residual
    1.492  1.530 -0.038 5.00e-02 4.00e+02 5.90e-01
  bond pdb=" CB  PRO F 128 "
       pdb=" CG  PRO F 128 "
    ideal  model  delta    sigma   weight residual
    1.492  1.530 -0.038 5.00e-02 4.00e+02 5.90e-01
  bond pdb=" CB  PRO b 128 "
       pdb=" CG  PRO b 128 "
    ideal  model  delta    sigma   weight residual
    1.492  1.530 -0.038 5.00e-02 4.00e+02 5.90e-01
  bond pdb=" CB  PRO h 128 "
       pdb=" CG  PRO h 128 "
    ideal  model  delta    sigma   weight residual
    1.492  1.530 -0.038 5.00e-02 4.00e+02 5.90e-01
  ... (remaining 94362 not shown)

  Histogram of bond angle deviations from ideal:
      100.78 -   107.40: 3538
      107.40 -   114.03: 55492
      114.03 -   120.66: 37157
      120.66 -   127.29: 30205
      127.29 -   133.91: 854
  Bond angle restraints: 127246
  Sorted by residual:
  angle pdb=" N   LEU n 111 "
        pdb=" CA  LEU n 111 "
        pdb=" C   LEU n 111 "
      ideal   model   delta    sigma   weight residual
     110.44  105.28    5.16 1.20e+00 6.94e-01 1.85e+01
  angle pdb=" N   LEU 9 111 "
        pdb=" CA  LEU 9 111 "
        pdb=" C   LEU 9 111 "
      ideal   model   delta    sigma   weight residual
     110.44  105.28    5.16 1.20e+00 6.94e-01 1.85e+01
  angle pdb=" N   LEU r 111 "
        pdb=" CA  LEU r 111 "
        pdb=" C   LEU r 111 "
      ideal   model   delta    sigma   weight residual
     110.44  105.28    5.16 1.20e+00 6.94e-01 1.85e+01
  angle pdb=" N   LEU j 111 "
        pdb=" CA  LEU j 111 "
        pdb=" C   LEU j 111 "
      ideal   model   delta    sigma   weight residual
     110.44  105.28    5.16 1.20e+00 6.94e-01 1.85e+01
  angle pdb=" N   LEU v 111 "
        pdb=" CA  LEU v 111 "
        pdb=" C   LEU v 111 "
      ideal   model   delta    sigma   weight residual
     110.44  105.28    5.16 1.20e+00 6.94e-01 1.85e+01
  ... (remaining 127241 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.87: 48415
       17.87 -    35.74: 6496
       35.74 -    53.61: 1954
       53.61 -    71.49: 245
       71.49 -    89.36: 126
  Dihedral angle restraints: 57236
    sinusoidal: 22771
      harmonic: 34465
  Sorted by residual:
  dihedral pdb=" CB  CYS B  95 "
           pdb=" SG  CYS B  95 "
           pdb=" SG  CYS C  95 "
           pdb=" CB  CYS C  95 "
      ideal   model   delta sinusoidal    sigma   weight residual
     -86.00   -0.00  -86.00     1      1.00e+01 1.00e-02 8.93e+01
  dihedral pdb=" CB  CYS B 184 "
           pdb=" SG  CYS B 184 "
           pdb=" SG  CYS C 184 "
           pdb=" CB  CYS C 184 "
      ideal   model   delta sinusoidal    sigma   weight residual
     -86.00   -0.00  -86.00     1      1.00e+01 1.00e-02 8.93e+01
  dihedral pdb=" CB  CYS B 222 "
           pdb=" SG  CYS B 222 "
           pdb=" SG  CYS C 222 "
           pdb=" CB  CYS C 222 "
      ideal   model   delta sinusoidal    sigma   weight residual
     -86.00   -0.00  -86.00     1      1.00e+01 1.00e-02 8.93e+01
  ... (remaining 57233 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.028: 9301
       0.028 -    0.057: 2970
       0.057 -    0.085: 1271
       0.085 -    0.114: 1139
       0.114 -    0.142: 264
  Chirality restraints: 14945
  Sorted by residual:
  chirality pdb=" CA  VAL T  64 "
            pdb=" N   VAL T  64 "
            pdb=" C   VAL T  64 "
            pdb=" CB  VAL T  64 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.58   -0.14 2.00e-01 2.50e+01 5.07e-01
  chirality pdb=" CA  VAL u  64 "
            pdb=" N   VAL u  64 "
            pdb=" C   VAL u  64 "
            pdb=" CB  VAL u  64 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.58   -0.14 2.00e-01 2.50e+01 5.07e-01
  chirality pdb=" CA  VAL N  64 "
            pdb=" N   VAL N  64 "
            pdb=" C   VAL N  64 "
            pdb=" CB  VAL N  64 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.44    2.58   -0.14 2.00e-01 2.50e+01 5.07e-01
  ... (remaining 14942 not shown)

  Planarity restraints: 15982
  Sorted by residual:
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" CB  PHE r 118 "    0.009 2.00e-02 2.50e+03   1.22e-02 2.62e+00
        pdb=" CG  PHE r 118 "   -0.028 2.00e-02 2.50e+03
        pdb=" CD1 PHE r 118 "    0.009 2.00e-02 2.50e+03
        pdb=" CD2 PHE r 118 "    0.009 2.00e-02 2.50e+03
        pdb=" CE1 PHE r 118 "    0.001 2.00e-02 2.50e+03
        pdb=" CE2 PHE r 118 "    0.000 2.00e-02 2.50e+03
        pdb=" CZ  PHE r 118 "   -0.000 2.00e-02 2.50e+03
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" CB  PHE n 118 "   -0.009 2.00e-02 2.50e+03   1.22e-02 2.62e+00
        pdb=" CG  PHE n 118 "    0.028 2.00e-02 2.50e+03
        pdb=" CD1 PHE n 118 "   -0.009 2.00e-02 2.50e+03
        pdb=" CD2 PHE n 118 "   -0.009 2.00e-02 2.50e+03
        pdb=" CE1 PHE n 118 "   -0.001 2.00e-02 2.50e+03
        pdb=" CE2 PHE n 118 "   -0.000 2.00e-02 2.50e+03
        pdb=" CZ  PHE n 118 "    0.000 2.00e-02 2.50e+03
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" CB  PHE v 118 "    0.009 2.00e-02 2.50e+03   1.22e-02 2.62e+00
        pdb=" CG  PHE v 118 "   -0.028 2.00e-02 2.50e+03
        pdb=" CD1 PHE v 118 "    0.009 2.00e-02 2.50e+03
        pdb=" CD2 PHE v 118 "    0.009 2.00e-02 2.50e+03
        pdb=" CE1 PHE v 118 "    0.001 2.00e-02 2.50e+03
        pdb=" CE2 PHE v 118 "    0.000 2.00e-02 2.50e+03
        pdb=" CZ  PHE v 118 "   -0.000 2.00e-02 2.50e+03
  ... (remaining 15979 not shown)

  Histogram of nonbonded interaction distances:
        0.31 -     1.23: 2210
        1.23 -     2.14: 3009
        2.14 -     3.06: 61220
        3.06 -     3.98: 249844
        3.98 -     4.90: 458744
  Warning: very small nonbonded interaction distances.
  Nonbonded interactions: 775027
  Sorted by model distance:
  nonbonded pdb=" OE1 GLU B 135 "
            pdb=" CD  GLU C 135 "
     model   vdw
     0.307 3.270
  nonbonded pdb=" O   THR B  61 "
            pdb=" C   THR C  61 "
     model   vdw
     0.379 3.270
  nonbonded pdb=" N   PHE B 167 "
            pdb=" C   PRO C 166 "
     model   vdw
     0.387 3.350
  nonbonded pdb=" C   CYS B 119 "
            pdb=" N   LYS C 120 "
     model   vdw
     0.387 3.350
  nonbonded pdb=" CD  GLU B  24 "
            pdb=" OE1 GLU C  24 "
     model   vdw
     0.406 3.270
  ... (remaining 775022 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Find NCS groups from input model
Found NCS groups:
ncs_group {
  reference = chain '0'
  selection = chain '1'
  selection = chain '2'
  selection = chain '3'
  selection = chain '4'
  selection = chain '5'
  selection = chain '6'
  selection = chain '7'
  selection = chain '8'
  selection = chain '9'
  selection = chain 'A'
  selection = chain 'B'
  selection = chain 'C'
  selection = chain 'D'
  selection = chain 'E'
  selection = chain 'F'
  selection = chain 'G'
  selection = chain 'H'
  selection = chain 'I'
  selection = chain 'J'
  selection = chain 'K'
  selection = chain 'L'
  selection = chain 'M'
  selection = chain 'N'
  selection = chain 'O'
  selection = chain 'P'
  selection = chain 'Q'
  selection = chain 'R'
  selection = chain 'S'
  selection = chain 'T'
  selection = chain 'U'
  selection = chain 'V'
  selection = chain 'W'
  selection = chain 'X'
  selection = chain 'Y'
  selection = chain 'Z'
  selection = chain 'a'
  selection = chain 'b'
  selection = chain 'c'
  selection = chain 'd'
  selection = chain 'e'
  selection = chain 'f'
  selection = chain 'g'
  selection = chain 'h'
  selection = chain 'i'
  selection = chain 'j'
  selection = chain 'k'
  selection = chain 'l'
  selection = chain 'm'
  selection = chain 'n'
  selection = chain 'o'
  selection = chain 'p'
  selection = chain 'q'
  selection = chain 'r'
  selection = chain 's'
  selection = chain 't'
  selection = chain 'u'
  selection = chain 'v'
  selection = chain 'w'
  selection = chain 'x'
  selection = chain 'y'
}

Set up NCS constraints
  No NCS constraints will be used in refinement.
Set refine NCS operators
Set scattering table
  Set to: electron
  Number of scattering types: 4
    Type Number    sf(0)   Gaussians
     S     610      5.16       5
     C   60268      2.51       5
     N   15128      2.21       5
     O   16592      1.98       5
    sf(0) = scattering factor at diffraction angle 0.
Adjust number of macro_cycles
  Number of macro_cycles: 10
Reset NCS operators
Extract rigid body selections
Check and reset occupancies
  Occupancies: min=1.00 max=1.00 mean=1.00
Load rotamer database and sin/cos tables
Set ADP refinement strategy
  ADPs will be refined as individual isotropic
Make a string to write initial .geo file
Internal consistency checks
Time:
  Set random seed:                         0.000
  Set model cs if undefined:               0.000
  Decide on map wrapping:                  0.000
  Normalize map: mean=0, sd=1:             5.690
  Set stop_for_unknowns flag:              0.000
  Assert model is a single copy model:     0.000
  Assert all atoms have isotropic ADPs:    0.000
  Construct map_model_manager:             0.090
  Extract box with map and model:          21.810
  Check model and map are aligned:         1.070
  Convert atoms to be neutral:             0.590
  Process input model:                     203.750
  Find NCS groups from input model:        4.930
  Set up NCS constraints:                  1.130
  Set refine NCS operators:                0.000
  Set scattering table:                    0.020
  Adjust number of macro_cycles:           0.000
  Reset NCS operators:                     0.000
  Extract rigid body selections:           0.000
  Check and reset occupancies:             0.010
  Load rotamer database and sin/cos tables:2.460
  Set ADP refinement strategy:             0.000
  Make a string to write initial .geo file:0.000
  Internal consistency checks:             0.000
  Total:  241.550
-------------------------------------------------------------------------------
Set refinement monitor
**********************
-------------------------------------------------------------------------------
Setup refinement engine
***********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.5938
moved from start:          0.0000

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.002   0.038  94367  Z= 0.155
  Angle     :  0.563   9.482 127246  Z= 0.305
  Chirality :  0.044   0.142  14945
  Planarity :  0.004   0.033  15982
  Dihedral  : 17.850  89.357  34831
  Min Nonbonded Distance : 0.307

Molprobity Statistics.
  All-atom Clashscore : 13.45
  Ramachandran Plot:
    Outliers :  0.00 %
    Allowed  :  2.01 %
    Favored  : 97.99 %
  Rotamer Outliers :  0.41 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.28 (0.08), residues: 12139
  helix:  0.80 (0.07), residues: 6039
  sheet: -1.22 (0.16), residues: 915
  loop : -1.14 (0.08), residues: 5185

*********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  2788 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 41
    poor density    : 2747
  time to evaluate  : 8.044 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 41
  outliers final: 12
  residues processed: 2771
  average time/residue: 0.7636
  time to fit residues: 3711.5345
Evaluate side-chains
  1752 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 12
    poor density    : 1740
  time to evaluate  : 9.220 
Switching outliers to nearest non-outliers
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 12
  outliers final: 2
  residues processed: 12
  average time/residue: 0.6335
  time to fit residues: 25.9050
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=5.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 1030 optimal weight:    0.0000
   chunk 924 optimal weight:    0.0670
   chunk 513 optimal weight:    3.9990
   chunk 315 optimal weight:    1.9990
   chunk 623 optimal weight:    5.9990
   chunk 494 optimal weight:    3.9990
   chunk 956 optimal weight:    2.9990
   chunk 370 optimal weight:    0.0980
   chunk 581 optimal weight:    0.9980
   chunk 711 optimal weight:    4.9990
   chunk 1107 optimal weight:    0.8980
   overall best weight:    0.4122

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** E 158 GLN ** both conformations clash, **PLEASE CHECK MANUALLY**
J  94 GLN
** J 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
L  29 HIS
L  94 GLN
** M 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** T 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** U 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** V 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
Z  29 HIS
Z  94 GLN
2  94 GLN
** 2 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
6  29 HIS
6  94 GLN
** 7 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
e  94 GLN
** e 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** g 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** i 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** q 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** r 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** u 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** v 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 9

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.6229
moved from start:          0.2752

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.011   0.528  94367  Z= 0.752
  Angle     :  1.330  52.086 127246  Z= 0.742
  Chirality :  0.086   3.723  14945
  Planarity :  0.008   0.292  15982
  Dihedral  :  5.812  61.797  12444
  Min Nonbonded Distance : 1.259

Molprobity Statistics.
  All-atom Clashscore : 35.80
  Ramachandran Plot:
    Outliers :  0.56 %
    Allowed  :  3.52 %
    Favored  : 95.92 %
  Rotamer Outliers :  6.14 %
  Cbeta Deviations :  0.68 %
  Peptide Plane:
    Cis-proline     : 9.84 %
    Cis-general     : 0.00 %
    Twisted Proline : 1.15 %
    Twisted General : 0.56 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.21 (0.08), residues: 12139
  helix:  1.10 (0.07), residues: 5907
  sheet: -1.39 (0.12), residues: 1652
  loop : -1.24 (0.09), residues: 4580

*********************** REFINEMENT MACRO_CYCLE 2 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  2454 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 614
    poor density    : 1840
  time to evaluate  : 7.946 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 614
  outliers final: 235
  residues processed: 2306
  average time/residue: 0.7333
  time to fit residues: 3043.7773
Evaluate side-chains
  1884 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 235
    poor density    : 1649
  time to evaluate  : 8.000 
Switching outliers to nearest non-outliers
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 235
  outliers final: 3
  residues processed: 235
  average time/residue: 0.6454
  time to fit residues: 299.2487
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=4.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 615 optimal weight:    0.9990
   chunk 343 optimal weight:    1.9990
   chunk 922 optimal weight:    5.9990
   chunk 754 optimal weight:    1.9990
   chunk 305 optimal weight:    6.9990
   chunk 1109 optimal weight:    0.6980
   chunk 1198 optimal weight:    1.9990
   chunk 988 optimal weight:    3.9990
   chunk 1100 optimal weight:    7.9990
   chunk 378 optimal weight:    6.9990
   chunk 890 optimal weight:    1.9990
   overall best weight:    1.5388

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
C  38 ASN
** C 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
C 179 ASN
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
D 110 HIS
** F 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
G  29 HIS
N  56 HIS
** P 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** Y 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
4  29 HIS
** 5 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
8  56 HIS
b  29 HIS
f 110 HIS
g 158 GLN
** h 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** l 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
o 110 HIS
s  56 HIS
w  56 HIS

Total number of N/Q/H flips: 13

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.6940
moved from start:          0.4912

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.009   0.539  94367  Z= 0.588
  Angle     :  1.148  39.370 127246  Z= 0.633
  Chirality :  0.070   2.198  14945
  Planarity :  0.008   0.226  15982
  Dihedral  :  6.020  62.072  12444
  Min Nonbonded Distance : 1.286

Molprobity Statistics.
  All-atom Clashscore : 27.58
  Ramachandran Plot:
    Outliers :  0.33 %
    Allowed  :  4.62 %
    Favored  : 95.05 %
  Rotamer Outliers :  5.03 %
  Cbeta Deviations :  0.40 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.82 %
    Twisted General : 0.45 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.44 (0.08), residues: 12139
  helix:  1.29 (0.07), residues: 5679
  sheet: -1.72 (0.12), residues: 1770
  loop : -1.68 (0.09), residues: 4690

*********************** REFINEMENT MACRO_CYCLE 3 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  2308 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 503
    poor density    : 1805
  time to evaluate  : 8.138 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 503
  outliers final: 270
  residues processed: 2142
  average time/residue: 0.7804
  time to fit residues: 2962.0736
Evaluate side-chains
  1808 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 270
    poor density    : 1538
  time to evaluate  : 8.044 
Switching outliers to nearest non-outliers
  outliers start: 270
  outliers final: 1
  residues processed: 270
  average time/residue: 0.6870
  time to fit residues: 362.3627
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=4.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 1096 optimal weight:    4.9990
   chunk 834 optimal weight:    6.9990
   chunk 576 optimal weight:    0.9990
   chunk 122 optimal weight:    0.8980
   chunk 529 optimal weight:    8.9990
   chunk 745 optimal weight:    2.9990
   chunk 1113 optimal weight:    1.9990
   chunk 1179 optimal weight:    1.9990
   chunk 581 optimal weight:    3.9990
   chunk 1055 optimal weight:    3.9990
   chunk 317 optimal weight:    4.9990
   overall best weight:    1.7788

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
B 179 ASN
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
D 110 HIS
** F 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
J 169 ASN
K  56 HIS
P 110 HIS
Q  56 HIS
S  29 HIS
Y 110 HIS
2 169 ASN
3  56 HIS
** 5 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
a  56 HIS
f 110 HIS
** h 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** l 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
o 110 HIS
p  29 HIS
s  56 HIS
w  56 HIS
y  29 HIS

Total number of N/Q/H flips: 17

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7357
moved from start:          0.7079

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.008   0.574  94367  Z= 0.520
  Angle     :  1.036  39.863 127246  Z= 0.563
  Chirality :  0.064   1.516  14945
  Planarity :  0.008   0.185  15982
  Dihedral  :  6.121  67.015  12444
  Min Nonbonded Distance : 1.317

Molprobity Statistics.
  All-atom Clashscore : 26.30
  Ramachandran Plot:
    Outliers :  0.29 %
    Allowed  :  4.90 %
    Favored  : 94.81 %
  Rotamer Outliers :  5.06 %
  Cbeta Deviations :  0.23 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.82 %
    Twisted General : 0.49 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.55 (0.08), residues: 12139
  helix:  1.14 (0.07), residues: 5716
  sheet: -1.90 (0.11), residues: 2065
  loop : -1.55 (0.09), residues: 4358

*********************** REFINEMENT MACRO_CYCLE 4 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  2181 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 506
    poor density    : 1675
  time to evaluate  : 8.110 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 506
  outliers final: 224
  residues processed: 2047
  average time/residue: 0.7745
  time to fit residues: 2808.0247
Evaluate side-chains
  1682 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 224
    poor density    : 1458
  time to evaluate  : 8.107 
Switching outliers to nearest non-outliers
  outliers start: 224
  outliers final: 1
  residues processed: 224
  average time/residue: 0.6672
  time to fit residues: 295.5072
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=3.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 982 optimal weight:    3.9990
   chunk 669 optimal weight:    8.9990
   chunk 17 optimal weight:    1.9990
   chunk 878 optimal weight:    0.7980
   chunk 486 optimal weight:    9.9990
   chunk 1006 optimal weight:    0.6980
   chunk 815 optimal weight:    3.9990
   chunk 1 optimal weight:    5.9990
   chunk 602 optimal weight:    2.9990
   chunk 1058 optimal weight:    3.9990
   chunk 297 optimal weight:    3.9990
   overall best weight:    2.0986

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** F 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** P 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** Y 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 5 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
f  29 HIS
f 110 HIS
** h 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** l 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
o 110 HIS

Total number of N/Q/H flips: 3

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7563
moved from start:          0.8580

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.008   0.733  94367  Z= 0.513
  Angle     :  0.986  37.333 127246  Z= 0.538
  Chirality :  0.061   1.431  14945
  Planarity :  0.007   0.166  15982
  Dihedral  :  6.213  69.425  12444
  Min Nonbonded Distance : 1.197

Molprobity Statistics.
  All-atom Clashscore : 26.18
  Ramachandran Plot:
    Outliers :  0.15 %
    Allowed  :  5.44 %
    Favored  : 94.41 %
  Rotamer Outliers :  4.28 %
  Cbeta Deviations :  0.19 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.66 %
    Twisted General : 0.45 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.88 (0.08), residues: 12139
  helix:  0.85 (0.07), residues: 6081
  sheet: -2.21 (0.10), residues: 2124
  loop : -1.82 (0.10), residues: 3934

*********************** REFINEMENT MACRO_CYCLE 5 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  1975 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 428
    poor density    : 1547
  time to evaluate  : 8.221 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 428
  outliers final: 194
  residues processed: 1840
  average time/residue: 0.8357
  time to fit residues: 2710.9395
Evaluate side-chains
  1548 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 194
    poor density    : 1354
  time to evaluate  : 10.370
Switching outliers to nearest non-outliers
   revert: symmetry clash
  outliers start: 194
  outliers final: 2
  residues processed: 194
  average time/residue: 0.6796
  time to fit residues: 265.7175
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=3.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 396 optimal weight:    0.7980
   chunk 1061 optimal weight:    4.9990
   chunk 233 optimal weight:    0.0870
   chunk 692 optimal weight:    0.9980
   chunk 291 optimal weight:    0.5980
   chunk 1180 optimal weight:    6.9990
   chunk 979 optimal weight:    0.9980
   chunk 546 optimal weight:    4.9990
   chunk 98 optimal weight:    0.0270
   chunk 390 optimal weight:    0.6980
   chunk 619 optimal weight:    3.9990
   overall best weight:    0.4416

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
D 110 HIS
F 110 HIS
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
P 110 HIS
Q  29 HIS
** R 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
W 144 HIS
Y 110 HIS
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
5 110 HIS
** 6 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
f 110 HIS
g 158 GLN
h 110 HIS
l 110 HIS
s  29 HIS
** t 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
w  29 HIS
** x 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 13

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7455
moved from start:          0.8808

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.006   0.714  94367  Z= 0.404
  Angle     :  0.869  34.897 127246  Z= 0.474
  Chirality :  0.056   1.214  14945
  Planarity :  0.006   0.164  15982
  Dihedral  :  5.834  68.722  12444
  Min Nonbonded Distance : 1.601

Molprobity Statistics.
  All-atom Clashscore : 22.50
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  4.23 %
    Favored  : 95.67 %
  Rotamer Outliers :  2.26 %
  Cbeta Deviations :  0.15 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.66 %
    Twisted General : 0.42 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.61 (0.08), residues: 12139
  helix:  1.14 (0.07), residues: 6087
  sheet: -2.09 (0.10), residues: 2478
  loop : -1.70 (0.11), residues: 3574

*********************** REFINEMENT MACRO_CYCLE 6 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  1782 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 226
    poor density    : 1556
  time to evaluate  : 8.123 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 226
  outliers final: 119
  residues processed: 1709
  average time/residue: 0.7804
  time to fit residues: 2342.8165
Evaluate side-chains
  1482 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 119
    poor density    : 1363
  time to evaluate  : 7.989 
Switching outliers to nearest non-outliers
   revert: symmetry clash
  outliers start: 119
  outliers final: 2
  residues processed: 119
  average time/residue: 0.6532
  time to fit residues: 158.8061
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=2.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 1138 optimal weight:    5.9990
   chunk 133 optimal weight:    0.9990
   chunk 672 optimal weight:    6.9990
   chunk 862 optimal weight:    1.9990
   chunk 667 optimal weight:    3.9990
   chunk 993 optimal weight:    3.9990
   chunk 659 optimal weight:    4.9990
   chunk 1175 optimal weight:    0.0670
   chunk 735 optimal weight:    6.9990
   chunk 716 optimal weight:    0.9980
   chunk 542 optimal weight:    0.6980
   overall best weight:    0.9522

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B 144 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** E 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** O 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
7 110 HIS
** 9 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** g 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** k 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 1

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7512
moved from start:          0.9139

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.006   0.738  94367  Z= 0.408
  Angle     :  0.858  30.604 127246  Z= 0.466
  Chirality :  0.056   1.475  14945
  Planarity :  0.007   0.176  15982
  Dihedral  :  5.765  66.977  12444
  Min Nonbonded Distance : 1.615

Molprobity Statistics.
  All-atom Clashscore : 22.23
  Ramachandran Plot:
    Outliers :  0.07 %
    Allowed  :  4.94 %
    Favored  : 94.98 %
  Rotamer Outliers :  2.25 %
  Cbeta Deviations :  0.14 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.66 %
    Twisted General : 0.42 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.46 (0.08), residues: 12139
  helix:  1.23 (0.07), residues: 6083
  sheet: -2.04 (0.11), residues: 2124
  loop : -1.65 (0.10), residues: 3932

*********************** REFINEMENT MACRO_CYCLE 7 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  1668 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 225
    poor density    : 1443
  time to evaluate  : 7.990 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 225
  outliers final: 90
  residues processed: 1600
  average time/residue: 0.8014
  time to fit residues: 2248.1831
Evaluate side-chains
  1445 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 90
    poor density    : 1355
  time to evaluate  : 8.002 
Switching outliers to nearest non-outliers
  outliers start: 90
  outliers final: 1
  residues processed: 90
  average time/residue: 0.6919
  time to fit residues: 127.4639
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=2.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 727 optimal weight:    0.0870
   chunk 469 optimal weight:    5.9990
   chunk 702 optimal weight:    3.9990
   chunk 354 optimal weight:    3.9990
   chunk 231 optimal weight:    0.9980
   chunk 227 optimal weight:    0.7980
   chunk 747 optimal weight:    5.9990
   chunk 801 optimal weight:    0.6980
   chunk 581 optimal weight:    0.9990
   chunk 109 optimal weight:    9.9990
   chunk 924 optimal weight:    8.9990
   overall best weight:    0.7160

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** E 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
P 110 HIS
Y 110 HIS
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
5 110 HIS
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** g 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** k 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 3

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7492
moved from start:          0.9365

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.006   0.717  94367  Z= 0.390
  Angle     :  0.854  33.477 127246  Z= 0.459
  Chirality :  0.056   1.211  14945
  Planarity :  0.006   0.167  15982
  Dihedral  :  5.679  67.293  12444
  Min Nonbonded Distance : 1.621

Molprobity Statistics.
  All-atom Clashscore : 21.54
  Ramachandran Plot:
    Outliers :  0.07 %
    Allowed  :  4.45 %
    Favored  : 95.49 %
  Rotamer Outliers :  1.54 %
  Cbeta Deviations :  0.12 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.49 %
    Twisted General : 0.39 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.35 (0.08), residues: 12139
  helix:  1.31 (0.07), residues: 6083
  sheet: -1.96 (0.11), residues: 2124
  loop : -1.60 (0.10), residues: 3932

*********************** REFINEMENT MACRO_CYCLE 8 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  1566 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 154
    poor density    : 1412
  time to evaluate  : 8.292 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 154
  outliers final: 65
  residues processed: 1524
  average time/residue: 0.8408
  time to fit residues: 2260.7097
Evaluate side-chains
  1378 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 65
    poor density    : 1313
  time to evaluate  : 8.163 
Switching outliers to nearest non-outliers
  outliers start: 65
  outliers final: 1
  residues processed: 65
  average time/residue: 0.6729
  time to fit residues: 94.7201
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 1069 optimal weight:    4.9990
   chunk 1126 optimal weight:    7.9990
   chunk 1027 optimal weight:    3.9990
   chunk 1095 optimal weight:    0.8980
   chunk 659 optimal weight:    4.9990
   chunk 477 optimal weight:    3.9990
   chunk 860 optimal weight:    8.9990
   chunk 336 optimal weight:    2.9990
   chunk 990 optimal weight:    0.9980
   chunk 1036 optimal weight:    1.9990
   chunk 1091 optimal weight:    0.9980
   overall best weight:    1.5784

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** E 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
M 110 HIS
V 110 HIS
** X 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 9 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** f 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** g 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** j 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** k 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** n 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 2

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7583
moved from start:          0.9778

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.006   0.728  94367  Z= 0.428
  Angle     :  0.875  37.443 127246  Z= 0.470
  Chirality :  0.057   1.332  14945
  Planarity :  0.007   0.169  15982
  Dihedral  :  5.869  64.963  12444
  Min Nonbonded Distance : 1.626

Molprobity Statistics.
  All-atom Clashscore : 22.78
  Ramachandran Plot:
    Outliers :  0.07 %
    Allowed  :  5.58 %
    Favored  : 94.36 %
  Rotamer Outliers :  1.24 %
  Cbeta Deviations :  0.12 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.49 %
    Twisted General : 0.36 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.40 (0.08), residues: 12139
  helix:  1.23 (0.07), residues: 6078
  sheet: -1.82 (0.11), residues: 2006
  loop : -1.70 (0.10), residues: 4055

*********************** REFINEMENT MACRO_CYCLE 9 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  1534 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 124
    poor density    : 1410
  time to evaluate  : 8.386 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 124
  outliers final: 68
  residues processed: 1487
  average time/residue: 0.8182
  time to fit residues: 2131.7801
Evaluate side-chains
  1417 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 68
    poor density    : 1349
  time to evaluate  : 8.111 
Switching outliers to nearest non-outliers
  outliers start: 68
  outliers final: 1
  residues processed: 68
  average time/residue: 0.6546
  time to fit residues: 96.8997
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 719 optimal weight:    3.9990
   chunk 1158 optimal weight:    1.9990
   chunk 707 optimal weight:    0.7980
   chunk 549 optimal weight:    6.9990
   chunk 805 optimal weight:    0.3980
   chunk 1215 optimal weight:    2.9990
   chunk 1118 optimal weight:    4.9990
   chunk 967 optimal weight:    9.9990
   chunk 100 optimal weight:    7.9990
   chunk 747 optimal weight:    0.9980
   chunk 593 optimal weight:    3.9990
   overall best weight:    1.4384

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B 169 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** E 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** O 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** X 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 9 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** f 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** g 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** h 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** k 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 0

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7587
moved from start:          1.0093

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.006   0.715  94367  Z= 0.424
  Angle     :  0.877  37.137 127246  Z= 0.469
  Chirality :  0.056   0.978  14945
  Planarity :  0.006   0.169  15982
  Dihedral  :  5.882  65.582  12444
  Min Nonbonded Distance : 1.640

Molprobity Statistics.
  All-atom Clashscore : 22.52
  Ramachandran Plot:
    Outliers :  0.05 %
    Allowed  :  5.04 %
    Favored  : 94.91 %
  Rotamer Outliers :  0.74 %
  Cbeta Deviations :  0.13 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.33 %
    Twisted General : 0.37 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.40 (0.08), residues: 12139
  helix:  1.23 (0.07), residues: 6078
  sheet: -1.82 (0.11), residues: 2006
  loop : -1.68 (0.10), residues: 4055

********************** REFINEMENT MACRO_CYCLE 10 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  24278 Ramachandran restraints generated.
    12139 Oldfield, 0 Emsley, 12139 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Evaluate side-chains
  1442 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 74
    poor density    : 1368
  time to evaluate  : 8.187 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
  outliers start: 74
  outliers final: 48
  residues processed: 1407
  average time/residue: 0.8288
  time to fit residues: 2045.6652
Evaluate side-chains
  1347 residues out of total 10004 non-(ALA, GLY, PRO) need fitting.
    rotamer outliers: 48
    poor density    : 1299
  time to evaluate  : 8.129 
Switching outliers to nearest non-outliers
  outliers start: 48
  outliers final: 1
  residues processed: 48
  average time/residue: 0.6615
  time to fit residues: 72.1097
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 1220
   random chunks:
   chunk 768 optimal weight:    4.9990
   chunk 1030 optimal weight:    2.9990
   chunk 296 optimal weight:    1.9990
   chunk 892 optimal weight:    0.4980
   chunk 142 optimal weight:    3.9990
   chunk 268 optimal weight:    4.9990
   chunk 969 optimal weight:    6.9990
   chunk 405 optimal weight:    5.9990
   chunk 995 optimal weight:    0.6980
   chunk 122 optimal weight:    4.9990
   chunk 178 optimal weight:    0.6980
   overall best weight:    1.3784

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** B  29 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
C  38 ASN
** C  56 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 182 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** E 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
F 110 HIS
** H 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** O 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** W 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
W 179 ASN
** X 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 0 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** 9 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** c 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** f 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** g 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
h 110 HIS
** k 110 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
l 110 HIS

Total number of N/Q/H flips: 5

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4128 r_free = 0.4128 target = 0.166447 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 52)----------------|
| r_work = 0.3929 r_free = 0.3929 target = 0.149064 restraints weight = 156280.334|
|-----------------------------------------------------------------------------|
r_work (start): 0.3927 rms_B_bonded: 2.43
r_work: 0.3842 rms_B_bonded: 3.02 restraints_weight: 0.5000
r_work (final): 0.3842
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7710
moved from start:          1.0376

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd. rmsZ for bonds and angles.
  Bond      :  0.006   0.697  94367  Z= 0.421
  Angle     :  0.876  34.723 127246  Z= 0.467
  Chirality :  0.056   1.079  14945
  Planarity :  0.007   0.166  15982
  Dihedral  :  5.866  65.604  12444
  Min Nonbonded Distance : 1.639

Molprobity Statistics.
  All-atom Clashscore : 22.45
  Ramachandran Plot:
    Outliers :  0.06 %
    Allowed  :  5.46 %
    Favored  : 94.48 %
  Rotamer Outliers :  0.71 %
  Cbeta Deviations :  0.13 %
  Peptide Plane:
    Cis-proline     : 10.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.33 %
    Twisted General : 0.35 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole: -0.49 (0.08), residues: 12139
  helix:  1.20 (0.07), residues: 6092
  sheet: -2.03 (0.11), residues: 2124
  loop : -1.67 (0.10), residues: 3923

===============================================================================
Job complete
usr+sys time: 35406.61 seconds
wall clock time: 614 minutes 48.72 seconds (36888.72 seconds total)