phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e9b_27962/05_2023/8e9b_27962_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e9b_27962/05_2023/8e9b_27962.map refinement.macro_cycles=10 scattering_table=electron resolution=3.5 write_initial_geo_file=False >& 8e9b.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e9b_27962/05_2023/8e9b_27962.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8e9b_27962/05_2023/8e9b_27962.map 3.5
Refinement ran but no refined model file.