phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8h00_34407/05_2023/8h00_34407.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8h00_34407/05_2023/8h00_34407.map refinement.macro_cycles=10 scattering_table=electron resolution=3.41 write_initial_geo_file=False >& 8h00.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8h00_34407/05_2023/8h00_34407.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8h00_34407/05_2023/8h00_34407.map 3.41
Refinement ran but no refined model file.