phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8p28_17359/10_2023/8p28_17359_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8p28_17359/10_2023/8p28_17359.map refinement.macro_cycles=10 scattering_table=electron resolution=2.77 write_initial_geo_file=False >& 8p28.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8p28_17359/10_2023/8p28_17359.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8p28_17359/10_2023/8p28_17359.map 2.77
Refinement ran but no refined model file.