Statistics: Creating restraints_manager failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8t1j_40969/07_2024/8t1j_40969.cif /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8t1j_40969/07_2024/8t1j_40969.map 2.7 Traceback (most recent call last): File "/net/marbles/raid1/dorothee/rerefine/cryoem/rerefine_script.py", line 390, in get_statistics checked_model.process(make_restraints=True) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/model/model.py", line 1981, in process allow_missing_symmetry = True) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/utils/__init__.py", line 288, in process_pdb_files allow_missing_symmetry = allow_missing_symmetry) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/utils/__init__.py", line 359, in _process_pdb_file substitute_non_crystallographic_unit_cell_if_necessary=allow_missing_symmetry) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 5804, in __init__ restraints_loading_flags=restraints_loading_flags) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 3611, in __init__ log=log, File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 2838, in __init__ conf_altloc=conformer.altloc, mm=mm) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5388/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 984, in assign_from_monomer_mapping ' new symbol: "%s" (%s)' % (symbol, source)])) Sorry: Conflicting scattering type symbols: initial symbol: "F" (from pdb element column) new symbol: "FE" (with residue name HEM) atom: "HETATM 6895 FE HEM A1504 .*. F "