phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zam_39880/11_2024/8zam_39880_neut.cif /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zam_39880/11_2024/8zam_39880.map refinement.macro_cycles=10 scattering_table=electron resolution=2.5 write_initial_geo_file=False >& 8zam.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zam_39880/11_2024/8zam_39880.cif /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zam_39880/11_2024/8zam_39880.map 2.5
Refinement ran but no refined model file.