phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zap_39883/10_2024/8zap_39883.cif /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zap_39883/10_2024/8zap_39883.map refinement.macro_cycles=10 scattering_table=electron resolution=2.6 write_initial_geo_file=False >& 8zap.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zap_39883/10_2024/8zap_39883.cif /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/8zap_39883/10_2024/8zap_39883.map 2.6
Refinement ran but no refined model file.