Starting phenix.real_space_refine
on Wed Aug 27 00:02:29 2025 by dcliebschner
===============================================================================

Processing files:
-------------------------------------------------------------------------------

  Found model, /net/cci-nas-00/data/ceres_data/9b6k_44262/08_2025/9b6k_44262.cif
  Found real_map, /net/cci-nas-00/data/ceres_data/9b6k_44262/08_2025/9b6k_44262.map

Processing PHIL parameters:
-------------------------------------------------------------------------------

  Adding command-line PHIL:
  -------------------------
    refinement.macro_cycles=10
    scattering_table=electron
    resolution=4.13
    write_initial_geo_file=False

Final processed PHIL parameters:
-------------------------------------------------------------------------------
  data_manager {
    model {
      file = "/net/cci-nas-00/data/ceres_data/9b6k_44262/08_2025/9b6k_44262.cif"
    }
    default_model = "/net/cci-nas-00/data/ceres_data/9b6k_44262/08_2025/9b6k_44262.cif"
    real_map_files = "/net/cci-nas-00/data/ceres_data/9b6k_44262/08_2025/9b6k_44262.map"
    default_real_map = "/net/cci-nas-00/data/ceres_data/9b6k_44262/08_2025/9b6k_44262.map"
  }
  resolution = 4.13
  write_initial_geo_file = False
  refinement {
    macro_cycles = 10
  }


Starting job
===============================================================================
-------------------------------------------------------------------------------
Citation:
*********
Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams
PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography.
Acta Cryst. D74:531-544.

Validating inputs
Origin is already at (0, 0, 0), no shifts will be applied
-------------------------------------------------------------------------------
Processing inputs
*****************
Set random seed
  Set to: 0
Set model cs if undefined
Decide on map wrapping
  Map wrapping is set to: False
Normalize map: mean=0, sd=1
  Input map: mean=   0.006 sd=   0.038
Set stop_for_unknowns flag
  Set to: True
Assert model is a single copy model
Assert all atoms have isotropic ADPs
Construct map_model_manager
Extract box with map and model
Check model and map are aligned
Set scattering table
  Set to: electron
  Number of scattering types: 6
    Type Number    sf(0)   Gaussians
     Ca      4      9.91       5
     S      88      5.16       5
     C   15656      2.51       5
     N    4140      2.21       5
     O    4324      1.98       5
     H   19264      0.53       5
    sf(0) = scattering factor at diffraction angle 0.
Process input model

  Symmetric amino acids flipped. Time to flip 4 residue(s): 0.02s

  Monomer Library directory:
    "/net/cci-filer3/home/dcliebschner/04_cryoem/phenix-2.0-5787/lib/python3.9/site-packages/chem_data/mon_lib"
  Total number of atoms: 43476
  Number of models: 1
  Model: ""
    Number of chains: 2
    Chain: "A"
      Number of atoms: 10868
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 919, 10868
          Classifications: {'peptide': 919}
          Link IDs: {'PTRANS': 22, 'TRANS': 896}
          Chain breaks: 10
          Unresolved non-hydrogen bonds: 1511
          Unresolved non-hydrogen angles: 1918
          Unresolved non-hydrogen dihedrals: 1235
          Unresolved non-hydrogen chiralities: 127
          Planarities with less than four sites: {'ASP:plan': 29, 'ASN:plan1': 36, 'PHE:plan': 21, 'GLN:plan1': 22, 'TYR:plan': 10, 'ARG:plan': 27, 'GLU:plan': 45, 'HIS:plan': 12, 'TRP:plan': 5}
          Unresolved non-hydrogen planarities: 897
    Chain: "A"
      Number of atoms: 1
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 1, 1
          Unusual residues: {' CA': 1}
          Classifications: {'undetermined': 1}
  Restraints were copied for chains:
    B, C, D
  Time building chain proxies: 14.96, per 1000 atoms: 0.34
  Number of scatterers: 43476
  At special positions: 0
  Unit cell: (154.44, 154.44, 152.28, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 6
    Type Number    sf(0)
     Ca      4     19.99
     S      88     16.00
     O    4324      8.00
     N    4140      7.00
     C   15656      6.00
     H   19264      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=8, symmetry=0
    Simple disulfide: pdb=" SG  CYS A 303 " - pdb=" SG  CYS A 326 " distance=2.75
    Simple disulfide: pdb=" SG  CYS A 929 " - pdb=" SG  CYS A 940 " distance=2.03
    Simple disulfide: pdb=" SG  CYS B 303 " - pdb=" SG  CYS B 326 " distance=2.75
    Simple disulfide: pdb=" SG  CYS C 303 " - pdb=" SG  CYS C 326 " distance=2.75
    Simple disulfide: pdb=" SG  CYS D 303 " - pdb=" SG  CYS D 326 " distance=2.75
    Simple disulfide: pdb=" SG  CYS B 929 " - pdb=" SG  CYS B 940 " distance=2.03
    Simple disulfide: pdb=" SG  CYS C 929 " - pdb=" SG  CYS C 940 " distance=2.03
    Simple disulfide: pdb=" SG  CYS D 929 " - pdb=" SG  CYS D 940 " distance=2.03

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.00
        Amino acid           : True  - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 3.93
  Conformation dependent library (CDL) restraints added in 1.1 seconds
  
  Enol-peptide restraints added in 715.3 nanoseconds
  

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  7016

  Finding SS restraints...
    Secondary structure from input PDB file:
      172 helices and 4 sheets defined
      71.6% alpha, 3.2% beta
      0 base pairs and 0 stacking pairs defined.
    Time for finding SS restraints: 1.04
  Creating SS restraints...
    Processing helix  chain 'A' and resid 40 through 50
      removed outlier: 3.570A  pdb=" N   PHE A  49 " --> pdb=" O   ILE A  45 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 125 through 136
    Processing helix  chain 'A' and resid 161 through 176
    Processing helix  chain 'A' and resid 187 through 202
      removed outlier: 4.173A  pdb=" N   TYR A 191 " --> pdb=" O   GLY A 187 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 273 through 288
      removed outlier: 3.932A  pdb=" N   LEU A 277 " --> pdb=" O   VAL A 273 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 309 through 322
    Processing helix  chain 'A' and resid 335 through 343
    Processing helix  chain 'A' and resid 351 through 357
    Processing helix  chain 'A' and resid 362 through 369
    Processing helix  chain 'A' and resid 370 through 386
    Processing helix  chain 'A' and resid 402 through 420
      removed outlier: 3.567A  pdb=" N   ILE A 408 " --> pdb=" O   VAL A 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU A 420 " --> pdb=" O   PHE A 416 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 425 through 436
      removed outlier: 3.721A  pdb=" N   TRP A 436 " --> pdb=" O   LEU A 432 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 439 through 446
      removed outlier: 3.651A  pdb=" N   ASP A 444 " --> pdb=" O   ASP A 440 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 460 through 469
    Processing helix  chain 'A' and resid 473 through 481
      removed outlier: 3.572A  pdb=" N   PHE A 477 " --> pdb=" O   PHE A 473 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 483 through 488
    Processing helix  chain 'A' and resid 489 through 499
    Processing helix  chain 'A' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN A 508 " --> pdb=" O   LEU A 504 " (cutoff:3.500A)
      removed outlier: 4.064A  pdb=" N   SER A 515 " --> pdb=" O   ILE A 511 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 518 through 535
      removed outlier: 3.703A  pdb=" N   PHE A 535 " --> pdb=" O   PHE A 531 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA A 563 " --> pdb=" O   HIS A 559 " (cutoff:3.500A)
      removed outlier: 3.789A  pdb=" N   GLN A 571 " --> pdb=" O   TRP A 567 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 573 through 584
    Processing helix  chain 'A' and resid 586 through 602
    Processing helix  chain 'A' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY A 612 " --> pdb=" O   ILE A 608 " (cutoff:3.500A)
      removed outlier: 3.563A  pdb=" N   THR A 630 " --> pdb=" O   VAL A 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU A 631 " --> pdb=" O   GLU A 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS A 632 " --> pdb=" O   LEU A 628 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 636 through 645
      removed outlier: 3.770A  pdb=" N   VAL A 645 " --> pdb=" O   GLU A 641 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 655 through 662
    Processing helix  chain 'A' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE A 669 " --> pdb=" O   ASP A 665 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 671 through 684
    Processing helix  chain 'A' and resid 691 through 701
      removed outlier: 3.805A  pdb=" N   PHE A 700 " --> pdb=" O   ILE A 696 " (cutoff:3.500A)
      removed outlier: 3.571A  pdb=" N   ILE A 701 " --> pdb=" O   LEU A 697 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 725 through 732
      removed outlier: 3.650A  pdb=" N   PHE A 730 " --> pdb=" O   TYR A 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE A 731 " --> pdb=" O   TYR A 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR A 732 " --> pdb=" O   VAL A 728 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 733 through 758
    Processing helix  chain 'A' and resid 765 through 789
    Processing helix  chain 'A' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE A 794 " --> pdb=" O   GLY A 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR A 795 " --> pdb=" O   VAL A 791 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 796 through 818
      removed outlier: 4.055A  pdb=" N   VAL A 800 " --> pdb=" O   ASP A 796 " (cutoff:3.500A)
      removed outlier: 3.784A  pdb=" N   MET A 801 " --> pdb=" O   LEU A 797 " (cutoff:3.500A)
      removed outlier: 3.677A  pdb=" N   ASP A 802 " --> pdb=" O   TRP A 798 " (cutoff:3.500A)
      removed outlier: 3.530A  pdb=" N   ALA A 811 " --> pdb=" O   PHE A 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS A 818 " --> pdb=" O   VAL A 814 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER A 827 " --> pdb=" O   SER A 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY A 828 " --> pdb=" O   SER A 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE A 838 " --> pdb=" O   LEU A 834 " (cutoff:3.500A)
      removed outlier: 3.704A  pdb=" N   ILE A 844 " --> pdb=" O   THR A 840 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 854 through 889
      removed outlier: 4.057A  pdb=" N   ILE A 858 " --> pdb=" O   GLY A 854 " (cutoff:3.500A)
      removed outlier: 3.960A  pdb=" N   MET A 859 " --> pdb=" O   PRO A 855 " (cutoff:3.500A)
      removed outlier: 4.119A  pdb=" N   LEU A 860 " --> pdb=" O   LYS A 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN A 861 " --> pdb=" O   ILE A 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG A 862 " --> pdb=" O   ILE A 858 " (cutoff:3.500A)
      removed outlier: 4.853A  pdb=" N   ILE A 865 " --> pdb=" O   GLN A 861 " (cutoff:3.500A)
      removed outlier: 5.290A  pdb=" N   ASP A 866 " --> pdb=" O   ARG A 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL A 867 " --> pdb=" O   MET A 863 " (cutoff:3.500A)
      removed outlier: 3.513A  pdb=" N   GLY A 887 " --> pdb=" O   VAL A 883 " (cutoff:3.500A)
      removed outlier: 4.217A  pdb=" N   ILE A 888 " --> pdb=" O   ALA A 884 " (cutoff:3.500A)
      removed outlier: 4.071A  pdb=" N   LEU A 889 " --> pdb=" O   ARG A 885 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 895 through 913
      Proline residue:  A 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE A 912 " --> pdb=" O   TYR A 908 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 915 through 920
      removed outlier: 3.858A  pdb=" N   ASP A 918 " --> pdb=" O   VAL A 915 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 944 through 948
      removed outlier: 4.082A  pdb=" N   ASN A 947 " --> pdb=" O   ASP A 944 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 952 through 969
      removed outlier: 3.751A  pdb=" N   THR A 956 " --> pdb=" O   PRO A 952 " (cutoff:3.500A)
      Proline residue:  A 958  - end of helix
      removed outlier: 3.804A  pdb=" N   ILE A 969 " --> pdb=" O   LEU A 965 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 970 through 1008
      removed outlier: 3.536A  pdb=" N   VAL A 976 " --> pdb=" O   VAL A 972 " (cutoff:3.500A)
      removed outlier: 3.718A  pdb=" N   ALA A 977 " --> pdb=" O   ASN A 973 " (cutoff:3.500A)
      removed outlier: 3.798A  pdb=" N   VAL A 986 " --> pdb=" O   THR A 982 " (cutoff:3.500A)
      removed outlier: 4.678A  pdb=" N   GLU A 988 " --> pdb=" O   GLY A 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN A 989 " --> pdb=" O   ILE A 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP A 991 " --> pdb=" O   GLN A 987 " (cutoff:3.500A)
      removed outlier: 4.686A  pdb=" N   GLN A 992 " --> pdb=" O   GLU A 988 " (cutoff:3.500A)
      removed outlier: 3.614A  pdb=" N   PHE A1000 " --> pdb=" O   PHE A 996 " (cutoff:3.500A)
      removed outlier: 3.545A  pdb=" N   LEU A1001 " --> pdb=" O   GLN A 997 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE A1018 " --> pdb=" O   PRO A1014 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 1051 through 1073
    Processing helix  chain 'A' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS A1080 " --> pdb=" O   GLU A1076 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 41 through 50
      removed outlier: 3.570A  pdb=" N   PHE B  49 " --> pdb=" O   ILE B  45 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 125 through 136
    Processing helix  chain 'B' and resid 161 through 176
    Processing helix  chain 'B' and resid 187 through 202
      removed outlier: 4.173A  pdb=" N   TYR B 191 " --> pdb=" O   GLY B 187 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 273 through 288
      removed outlier: 3.933A  pdb=" N   LEU B 277 " --> pdb=" O   VAL B 273 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 309 through 322
    Processing helix  chain 'B' and resid 335 through 343
    Processing helix  chain 'B' and resid 351 through 357
    Processing helix  chain 'B' and resid 362 through 369
    Processing helix  chain 'B' and resid 370 through 386
    Processing helix  chain 'B' and resid 402 through 420
      removed outlier: 3.567A  pdb=" N   ILE B 408 " --> pdb=" O   VAL B 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU B 420 " --> pdb=" O   PHE B 416 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 425 through 436
      removed outlier: 3.720A  pdb=" N   TRP B 436 " --> pdb=" O   LEU B 432 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 439 through 446
      removed outlier: 3.650A  pdb=" N   ASP B 444 " --> pdb=" O   ASP B 440 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 460 through 469
    Processing helix  chain 'B' and resid 473 through 481
      removed outlier: 3.572A  pdb=" N   PHE B 477 " --> pdb=" O   PHE B 473 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 483 through 488
    Processing helix  chain 'B' and resid 489 through 499
    Processing helix  chain 'B' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN B 508 " --> pdb=" O   LEU B 504 " (cutoff:3.500A)
      removed outlier: 4.063A  pdb=" N   SER B 515 " --> pdb=" O   ILE B 511 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 518 through 535
      removed outlier: 3.702A  pdb=" N   PHE B 535 " --> pdb=" O   PHE B 531 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA B 563 " --> pdb=" O   HIS B 559 " (cutoff:3.500A)
      removed outlier: 3.790A  pdb=" N   GLN B 571 " --> pdb=" O   TRP B 567 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 573 through 584
    Processing helix  chain 'B' and resid 586 through 602
    Processing helix  chain 'B' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY B 612 " --> pdb=" O   ILE B 608 " (cutoff:3.500A)
      removed outlier: 3.563A  pdb=" N   THR B 630 " --> pdb=" O   VAL B 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU B 631 " --> pdb=" O   GLU B 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS B 632 " --> pdb=" O   LEU B 628 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 636 through 645
      removed outlier: 3.769A  pdb=" N   VAL B 645 " --> pdb=" O   GLU B 641 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 655 through 662
    Processing helix  chain 'B' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE B 669 " --> pdb=" O   ASP B 665 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 671 through 684
    Processing helix  chain 'B' and resid 691 through 701
      removed outlier: 3.806A  pdb=" N   PHE B 700 " --> pdb=" O   ILE B 696 " (cutoff:3.500A)
      removed outlier: 3.571A  pdb=" N   ILE B 701 " --> pdb=" O   LEU B 697 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 725 through 732
      removed outlier: 3.651A  pdb=" N   PHE B 730 " --> pdb=" O   TYR B 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE B 731 " --> pdb=" O   TYR B 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR B 732 " --> pdb=" O   VAL B 728 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 733 through 758
    Processing helix  chain 'B' and resid 765 through 789
    Processing helix  chain 'B' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE B 794 " --> pdb=" O   GLY B 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR B 795 " --> pdb=" O   VAL B 791 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 796 through 818
      removed outlier: 4.056A  pdb=" N   VAL B 800 " --> pdb=" O   ASP B 796 " (cutoff:3.500A)
      removed outlier: 3.783A  pdb=" N   MET B 801 " --> pdb=" O   LEU B 797 " (cutoff:3.500A)
      removed outlier: 3.678A  pdb=" N   ASP B 802 " --> pdb=" O   TRP B 798 " (cutoff:3.500A)
      removed outlier: 3.529A  pdb=" N   ALA B 811 " --> pdb=" O   PHE B 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS B 818 " --> pdb=" O   VAL B 814 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER B 827 " --> pdb=" O   SER B 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY B 828 " --> pdb=" O   SER B 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE B 838 " --> pdb=" O   LEU B 834 " (cutoff:3.500A)
      removed outlier: 3.705A  pdb=" N   ILE B 844 " --> pdb=" O   THR B 840 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 854 through 889
      removed outlier: 4.057A  pdb=" N   ILE B 858 " --> pdb=" O   GLY B 854 " (cutoff:3.500A)
      removed outlier: 3.959A  pdb=" N   MET B 859 " --> pdb=" O   PRO B 855 " (cutoff:3.500A)
      removed outlier: 4.118A  pdb=" N   LEU B 860 " --> pdb=" O   LYS B 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN B 861 " --> pdb=" O   ILE B 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG B 862 " --> pdb=" O   ILE B 858 " (cutoff:3.500A)
      removed outlier: 4.854A  pdb=" N   ILE B 865 " --> pdb=" O   GLN B 861 " (cutoff:3.500A)
      removed outlier: 5.290A  pdb=" N   ASP B 866 " --> pdb=" O   ARG B 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL B 867 " --> pdb=" O   MET B 863 " (cutoff:3.500A)
      removed outlier: 3.513A  pdb=" N   GLY B 887 " --> pdb=" O   VAL B 883 " (cutoff:3.500A)
      removed outlier: 4.216A  pdb=" N   ILE B 888 " --> pdb=" O   ALA B 884 " (cutoff:3.500A)
      removed outlier: 4.070A  pdb=" N   LEU B 889 " --> pdb=" O   ARG B 885 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 895 through 913
      Proline residue:  B 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE B 912 " --> pdb=" O   TYR B 908 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 915 through 920
      removed outlier: 3.859A  pdb=" N   ASP B 918 " --> pdb=" O   VAL B 915 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 944 through 948
      removed outlier: 4.082A  pdb=" N   ASN B 947 " --> pdb=" O   ASP B 944 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 952 through 969
      removed outlier: 3.751A  pdb=" N   THR B 956 " --> pdb=" O   PRO B 952 " (cutoff:3.500A)
      Proline residue:  B 958  - end of helix
      removed outlier: 3.804A  pdb=" N   ILE B 969 " --> pdb=" O   LEU B 965 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 970 through 1008
      removed outlier: 3.536A  pdb=" N   VAL B 976 " --> pdb=" O   VAL B 972 " (cutoff:3.500A)
      removed outlier: 3.718A  pdb=" N   ALA B 977 " --> pdb=" O   ASN B 973 " (cutoff:3.500A)
      removed outlier: 3.798A  pdb=" N   VAL B 986 " --> pdb=" O   THR B 982 " (cutoff:3.500A)
      removed outlier: 4.679A  pdb=" N   GLU B 988 " --> pdb=" O   GLY B 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN B 989 " --> pdb=" O   ILE B 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP B 991 " --> pdb=" O   GLN B 987 " (cutoff:3.500A)
      removed outlier: 4.686A  pdb=" N   GLN B 992 " --> pdb=" O   GLU B 988 " (cutoff:3.500A)
      removed outlier: 3.615A  pdb=" N   PHE B1000 " --> pdb=" O   PHE B 996 " (cutoff:3.500A)
      removed outlier: 3.545A  pdb=" N   LEU B1001 " --> pdb=" O   GLN B 997 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE B1018 " --> pdb=" O   PRO B1014 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 1051 through 1073
    Processing helix  chain 'B' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS B1080 " --> pdb=" O   GLU B1076 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 41 through 50
      removed outlier: 3.570A  pdb=" N   PHE C  49 " --> pdb=" O   ILE C  45 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 125 through 136
    Processing helix  chain 'C' and resid 161 through 176
    Processing helix  chain 'C' and resid 187 through 202
      removed outlier: 4.173A  pdb=" N   TYR C 191 " --> pdb=" O   GLY C 187 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 273 through 288
      removed outlier: 3.932A  pdb=" N   LEU C 277 " --> pdb=" O   VAL C 273 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 309 through 322
    Processing helix  chain 'C' and resid 335 through 343
    Processing helix  chain 'C' and resid 351 through 357
    Processing helix  chain 'C' and resid 362 through 369
    Processing helix  chain 'C' and resid 370 through 386
    Processing helix  chain 'C' and resid 402 through 420
      removed outlier: 3.567A  pdb=" N   ILE C 408 " --> pdb=" O   VAL C 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU C 420 " --> pdb=" O   PHE C 416 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 425 through 436
      removed outlier: 3.720A  pdb=" N   TRP C 436 " --> pdb=" O   LEU C 432 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 439 through 446
      removed outlier: 3.651A  pdb=" N   ASP C 444 " --> pdb=" O   ASP C 440 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 460 through 469
    Processing helix  chain 'C' and resid 473 through 481
      removed outlier: 3.572A  pdb=" N   PHE C 477 " --> pdb=" O   PHE C 473 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 483 through 488
    Processing helix  chain 'C' and resid 489 through 499
    Processing helix  chain 'C' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN C 508 " --> pdb=" O   LEU C 504 " (cutoff:3.500A)
      removed outlier: 4.063A  pdb=" N   SER C 515 " --> pdb=" O   ILE C 511 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 518 through 535
      removed outlier: 3.702A  pdb=" N   PHE C 535 " --> pdb=" O   PHE C 531 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA C 563 " --> pdb=" O   HIS C 559 " (cutoff:3.500A)
      removed outlier: 3.789A  pdb=" N   GLN C 571 " --> pdb=" O   TRP C 567 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 573 through 584
    Processing helix  chain 'C' and resid 586 through 602
    Processing helix  chain 'C' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY C 612 " --> pdb=" O   ILE C 608 " (cutoff:3.500A)
      removed outlier: 3.564A  pdb=" N   THR C 630 " --> pdb=" O   VAL C 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU C 631 " --> pdb=" O   GLU C 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS C 632 " --> pdb=" O   LEU C 628 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 636 through 645
      removed outlier: 3.770A  pdb=" N   VAL C 645 " --> pdb=" O   GLU C 641 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 655 through 662
    Processing helix  chain 'C' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE C 669 " --> pdb=" O   ASP C 665 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 671 through 684
    Processing helix  chain 'C' and resid 691 through 701
      removed outlier: 3.805A  pdb=" N   PHE C 700 " --> pdb=" O   ILE C 696 " (cutoff:3.500A)
      removed outlier: 3.570A  pdb=" N   ILE C 701 " --> pdb=" O   LEU C 697 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 725 through 732
      removed outlier: 3.651A  pdb=" N   PHE C 730 " --> pdb=" O   TYR C 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE C 731 " --> pdb=" O   TYR C 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR C 732 " --> pdb=" O   VAL C 728 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 733 through 758
    Processing helix  chain 'C' and resid 765 through 789
    Processing helix  chain 'C' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE C 794 " --> pdb=" O   GLY C 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR C 795 " --> pdb=" O   VAL C 791 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 796 through 818
      removed outlier: 4.056A  pdb=" N   VAL C 800 " --> pdb=" O   ASP C 796 " (cutoff:3.500A)
      removed outlier: 3.783A  pdb=" N   MET C 801 " --> pdb=" O   LEU C 797 " (cutoff:3.500A)
      removed outlier: 3.678A  pdb=" N   ASP C 802 " --> pdb=" O   TRP C 798 " (cutoff:3.500A)
      removed outlier: 3.530A  pdb=" N   ALA C 811 " --> pdb=" O   PHE C 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS C 818 " --> pdb=" O   VAL C 814 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER C 827 " --> pdb=" O   SER C 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY C 828 " --> pdb=" O   SER C 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE C 838 " --> pdb=" O   LEU C 834 " (cutoff:3.500A)
      removed outlier: 3.704A  pdb=" N   ILE C 844 " --> pdb=" O   THR C 840 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 854 through 889
      removed outlier: 4.056A  pdb=" N   ILE C 858 " --> pdb=" O   GLY C 854 " (cutoff:3.500A)
      removed outlier: 3.960A  pdb=" N   MET C 859 " --> pdb=" O   PRO C 855 " (cutoff:3.500A)
      removed outlier: 4.118A  pdb=" N   LEU C 860 " --> pdb=" O   LYS C 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN C 861 " --> pdb=" O   ILE C 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG C 862 " --> pdb=" O   ILE C 858 " (cutoff:3.500A)
      removed outlier: 4.854A  pdb=" N   ILE C 865 " --> pdb=" O   GLN C 861 " (cutoff:3.500A)
      removed outlier: 5.290A  pdb=" N   ASP C 866 " --> pdb=" O   ARG C 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL C 867 " --> pdb=" O   MET C 863 " (cutoff:3.500A)
      removed outlier: 3.512A  pdb=" N   GLY C 887 " --> pdb=" O   VAL C 883 " (cutoff:3.500A)
      removed outlier: 4.216A  pdb=" N   ILE C 888 " --> pdb=" O   ALA C 884 " (cutoff:3.500A)
      removed outlier: 4.070A  pdb=" N   LEU C 889 " --> pdb=" O   ARG C 885 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 895 through 913
      Proline residue:  C 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE C 912 " --> pdb=" O   TYR C 908 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 915 through 920
      removed outlier: 3.858A  pdb=" N   ASP C 918 " --> pdb=" O   VAL C 915 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 944 through 948
      removed outlier: 4.082A  pdb=" N   ASN C 947 " --> pdb=" O   ASP C 944 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 952 through 969
      removed outlier: 3.751A  pdb=" N   THR C 956 " --> pdb=" O   PRO C 952 " (cutoff:3.500A)
      Proline residue:  C 958  - end of helix
      removed outlier: 3.804A  pdb=" N   ILE C 969 " --> pdb=" O   LEU C 965 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 970 through 1008
      removed outlier: 3.535A  pdb=" N   VAL C 976 " --> pdb=" O   VAL C 972 " (cutoff:3.500A)
      removed outlier: 3.718A  pdb=" N   ALA C 977 " --> pdb=" O   ASN C 973 " (cutoff:3.500A)
      removed outlier: 3.798A  pdb=" N   VAL C 986 " --> pdb=" O   THR C 982 " (cutoff:3.500A)
      removed outlier: 4.678A  pdb=" N   GLU C 988 " --> pdb=" O   GLY C 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN C 989 " --> pdb=" O   ILE C 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP C 991 " --> pdb=" O   GLN C 987 " (cutoff:3.500A)
      removed outlier: 4.685A  pdb=" N   GLN C 992 " --> pdb=" O   GLU C 988 " (cutoff:3.500A)
      removed outlier: 3.614A  pdb=" N   PHE C1000 " --> pdb=" O   PHE C 996 " (cutoff:3.500A)
      removed outlier: 3.546A  pdb=" N   LEU C1001 " --> pdb=" O   GLN C 997 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE C1018 " --> pdb=" O   PRO C1014 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 1051 through 1073
    Processing helix  chain 'C' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS C1080 " --> pdb=" O   GLU C1076 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 41 through 50
      removed outlier: 3.570A  pdb=" N   PHE D  49 " --> pdb=" O   ILE D  45 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 125 through 136
    Processing helix  chain 'D' and resid 161 through 176
    Processing helix  chain 'D' and resid 187 through 202
      removed outlier: 4.172A  pdb=" N   TYR D 191 " --> pdb=" O   GLY D 187 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 273 through 288
      removed outlier: 3.933A  pdb=" N   LEU D 277 " --> pdb=" O   VAL D 273 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 309 through 322
    Processing helix  chain 'D' and resid 335 through 343
    Processing helix  chain 'D' and resid 351 through 357
    Processing helix  chain 'D' and resid 362 through 369
    Processing helix  chain 'D' and resid 370 through 386
    Processing helix  chain 'D' and resid 402 through 420
      removed outlier: 3.566A  pdb=" N   ILE D 408 " --> pdb=" O   VAL D 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU D 420 " --> pdb=" O   PHE D 416 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 425 through 436
      removed outlier: 3.721A  pdb=" N   TRP D 436 " --> pdb=" O   LEU D 432 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 439 through 446
      removed outlier: 3.650A  pdb=" N   ASP D 444 " --> pdb=" O   ASP D 440 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 460 through 469
    Processing helix  chain 'D' and resid 473 through 481
      removed outlier: 3.571A  pdb=" N   PHE D 477 " --> pdb=" O   PHE D 473 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 483 through 488
    Processing helix  chain 'D' and resid 489 through 499
    Processing helix  chain 'D' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN D 508 " --> pdb=" O   LEU D 504 " (cutoff:3.500A)
      removed outlier: 4.064A  pdb=" N   SER D 515 " --> pdb=" O   ILE D 511 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 518 through 535
      removed outlier: 3.702A  pdb=" N   PHE D 535 " --> pdb=" O   PHE D 531 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA D 563 " --> pdb=" O   HIS D 559 " (cutoff:3.500A)
      removed outlier: 3.790A  pdb=" N   GLN D 571 " --> pdb=" O   TRP D 567 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 573 through 584
    Processing helix  chain 'D' and resid 586 through 602
    Processing helix  chain 'D' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY D 612 " --> pdb=" O   ILE D 608 " (cutoff:3.500A)
      removed outlier: 3.563A  pdb=" N   THR D 630 " --> pdb=" O   VAL D 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU D 631 " --> pdb=" O   GLU D 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS D 632 " --> pdb=" O   LEU D 628 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 636 through 645
      removed outlier: 3.770A  pdb=" N   VAL D 645 " --> pdb=" O   GLU D 641 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 655 through 662
    Processing helix  chain 'D' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE D 669 " --> pdb=" O   ASP D 665 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 671 through 684
    Processing helix  chain 'D' and resid 691 through 701
      removed outlier: 3.805A  pdb=" N   PHE D 700 " --> pdb=" O   ILE D 696 " (cutoff:3.500A)
      removed outlier: 3.570A  pdb=" N   ILE D 701 " --> pdb=" O   LEU D 697 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 725 through 732
      removed outlier: 3.651A  pdb=" N   PHE D 730 " --> pdb=" O   TYR D 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE D 731 " --> pdb=" O   TYR D 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR D 732 " --> pdb=" O   VAL D 728 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 733 through 758
    Processing helix  chain 'D' and resid 765 through 789
    Processing helix  chain 'D' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE D 794 " --> pdb=" O   GLY D 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR D 795 " --> pdb=" O   VAL D 791 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 796 through 818
      removed outlier: 4.056A  pdb=" N   VAL D 800 " --> pdb=" O   ASP D 796 " (cutoff:3.500A)
      removed outlier: 3.783A  pdb=" N   MET D 801 " --> pdb=" O   LEU D 797 " (cutoff:3.500A)
      removed outlier: 3.678A  pdb=" N   ASP D 802 " --> pdb=" O   TRP D 798 " (cutoff:3.500A)
      removed outlier: 3.530A  pdb=" N   ALA D 811 " --> pdb=" O   PHE D 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS D 818 " --> pdb=" O   VAL D 814 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER D 827 " --> pdb=" O   SER D 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY D 828 " --> pdb=" O   SER D 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE D 838 " --> pdb=" O   LEU D 834 " (cutoff:3.500A)
      removed outlier: 3.705A  pdb=" N   ILE D 844 " --> pdb=" O   THR D 840 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 854 through 889
      removed outlier: 4.057A  pdb=" N   ILE D 858 " --> pdb=" O   GLY D 854 " (cutoff:3.500A)
      removed outlier: 3.960A  pdb=" N   MET D 859 " --> pdb=" O   PRO D 855 " (cutoff:3.500A)
      removed outlier: 4.118A  pdb=" N   LEU D 860 " --> pdb=" O   LYS D 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN D 861 " --> pdb=" O   ILE D 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG D 862 " --> pdb=" O   ILE D 858 " (cutoff:3.500A)
      removed outlier: 4.854A  pdb=" N   ILE D 865 " --> pdb=" O   GLN D 861 " (cutoff:3.500A)
      removed outlier: 5.291A  pdb=" N   ASP D 866 " --> pdb=" O   ARG D 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL D 867 " --> pdb=" O   MET D 863 " (cutoff:3.500A)
      removed outlier: 3.514A  pdb=" N   GLY D 887 " --> pdb=" O   VAL D 883 " (cutoff:3.500A)
      removed outlier: 4.217A  pdb=" N   ILE D 888 " --> pdb=" O   ALA D 884 " (cutoff:3.500A)
      removed outlier: 4.070A  pdb=" N   LEU D 889 " --> pdb=" O   ARG D 885 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 895 through 913
      Proline residue:  D 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE D 912 " --> pdb=" O   TYR D 908 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 915 through 920
      removed outlier: 3.858A  pdb=" N   ASP D 918 " --> pdb=" O   VAL D 915 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 944 through 948
      removed outlier: 4.083A  pdb=" N   ASN D 947 " --> pdb=" O   ASP D 944 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 952 through 968
      removed outlier: 3.751A  pdb=" N   THR D 956 " --> pdb=" O   PRO D 952 " (cutoff:3.500A)
      Proline residue:  D 958  - end of helix
    Processing helix  chain 'D' and resid 970 through 1008
      removed outlier: 3.536A  pdb=" N   VAL D 976 " --> pdb=" O   VAL D 972 " (cutoff:3.500A)
      removed outlier: 3.717A  pdb=" N   ALA D 977 " --> pdb=" O   ASN D 973 " (cutoff:3.500A)
      removed outlier: 3.799A  pdb=" N   VAL D 986 " --> pdb=" O   THR D 982 " (cutoff:3.500A)
      removed outlier: 4.679A  pdb=" N   GLU D 988 " --> pdb=" O   GLY D 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN D 989 " --> pdb=" O   ILE D 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP D 991 " --> pdb=" O   GLN D 987 " (cutoff:3.500A)
      removed outlier: 4.686A  pdb=" N   GLN D 992 " --> pdb=" O   GLU D 988 " (cutoff:3.500A)
      removed outlier: 3.615A  pdb=" N   PHE D1000 " --> pdb=" O   PHE D 996 " (cutoff:3.500A)
      removed outlier: 3.545A  pdb=" N   LEU D1001 " --> pdb=" O   GLN D 997 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE D1018 " --> pdb=" O   PRO D1014 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 1051 through 1073
    Processing helix  chain 'D' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS D1080 " --> pdb=" O   GLU D1076 " (cutoff:3.500A)
    Processing sheet with id=AA1, first strand: chain 'A' and resid 116 through 121
      removed outlier: 3.817A  pdb=" N   ASP A 264 " --> pdb=" O   LEU A 120 " (cutoff:3.500A)
      removed outlier: 6.379A  pdb=" N   ALA A 211 " --> pdb=" O   HIS A 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU A 261 " --> pdb=" O   ALA A 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY A 213 " --> pdb=" O   LEU A 261 " (cutoff:3.500A)
      removed outlier: 7.584A  pdb=" N   VAL A 263 " --> pdb=" O   GLY A 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE A 179 " --> pdb=" O   ILE A 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE A 214 " --> pdb=" O   ILE A 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR A 181 " --> pdb=" O   ILE A 214 " (cutoff:3.500A)
      removed outlier: 6.097A  pdb=" N   CYS A 303 " --> pdb=" O   VAL A 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL A 329 " --> pdb=" O   CYS A 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA A 305 " --> pdb=" O   VAL A 329 " (cutoff:3.500A)
    Processing sheet with id=AA2, first strand: chain 'B' and resid 116 through 121
      removed outlier: 3.817A  pdb=" N   ASP B 264 " --> pdb=" O   LEU B 120 " (cutoff:3.500A)
      removed outlier: 6.380A  pdb=" N   ALA B 211 " --> pdb=" O   HIS B 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU B 261 " --> pdb=" O   ALA B 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY B 213 " --> pdb=" O   LEU B 261 " (cutoff:3.500A)
      removed outlier: 7.583A  pdb=" N   VAL B 263 " --> pdb=" O   GLY B 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE B 179 " --> pdb=" O   ILE B 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE B 214 " --> pdb=" O   ILE B 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR B 181 " --> pdb=" O   ILE B 214 " (cutoff:3.500A)
      removed outlier: 6.097A  pdb=" N   CYS B 303 " --> pdb=" O   VAL B 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL B 329 " --> pdb=" O   CYS B 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA B 305 " --> pdb=" O   VAL B 329 " (cutoff:3.500A)
    Processing sheet with id=AA3, first strand: chain 'C' and resid 116 through 121
      removed outlier: 3.818A  pdb=" N   ASP C 264 " --> pdb=" O   LEU C 120 " (cutoff:3.500A)
      removed outlier: 6.379A  pdb=" N   ALA C 211 " --> pdb=" O   HIS C 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU C 261 " --> pdb=" O   ALA C 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY C 213 " --> pdb=" O   LEU C 261 " (cutoff:3.500A)
      removed outlier: 7.584A  pdb=" N   VAL C 263 " --> pdb=" O   GLY C 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE C 179 " --> pdb=" O   ILE C 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE C 214 " --> pdb=" O   ILE C 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR C 181 " --> pdb=" O   ILE C 214 " (cutoff:3.500A)
      removed outlier: 6.096A  pdb=" N   CYS C 303 " --> pdb=" O   VAL C 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL C 329 " --> pdb=" O   CYS C 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA C 305 " --> pdb=" O   VAL C 329 " (cutoff:3.500A)
    Processing sheet with id=AA4, first strand: chain 'D' and resid 116 through 121
      removed outlier: 3.817A  pdb=" N   ASP D 264 " --> pdb=" O   LEU D 120 " (cutoff:3.500A)
      removed outlier: 6.379A  pdb=" N   ALA D 211 " --> pdb=" O   HIS D 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU D 261 " --> pdb=" O   ALA D 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY D 213 " --> pdb=" O   LEU D 261 " (cutoff:3.500A)
      removed outlier: 7.584A  pdb=" N   VAL D 263 " --> pdb=" O   GLY D 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE D 179 " --> pdb=" O   ILE D 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE D 214 " --> pdb=" O   ILE D 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR D 181 " --> pdb=" O   ILE D 214 " (cutoff:3.500A)
      removed outlier: 6.097A  pdb=" N   CYS D 303 " --> pdb=" O   VAL D 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL D 329 " --> pdb=" O   CYS D 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA D 305 " --> pdb=" O   VAL D 329 " (cutoff:3.500A)

    1737 hydrogen bonds defined for protein.
    5163 hydrogen bond angles defined for protein.
    Restraints generated for nucleic acids:
      0 hydrogen bonds
      0 hydrogen bond angles
      0 basepair planarities
      0 basepair parallelities
      0 stacking parallelities
  Total time for adding SS restraints: 8.65

  Time building geometry restraints manager: 5.36 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.03: 19228
        1.03 -     1.23: 56
        1.23 -     1.42: 10516
        1.42 -     1.62: 14032
        1.62 -     1.81: 124
  Bond restraints: 43956
  Sorted by residual:
  bond pdb=" CA  ALA C 977 "
       pdb=" C   ALA C 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.489  0.035 1.27e-02 6.20e+03 7.44e+00
  bond pdb=" CA  ALA A 977 "
       pdb=" C   ALA A 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.489  0.035 1.27e-02 6.20e+03 7.44e+00
  bond pdb=" CA  ALA B 977 "
       pdb=" C   ALA B 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.490  0.034 1.27e-02 6.20e+03 7.16e+00
  bond pdb=" CA  ALA D 977 "
       pdb=" C   ALA D 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.490  0.034 1.27e-02 6.20e+03 7.16e+00
  bond pdb=" C   ALA A 977 "
       pdb=" O   ALA A 977 "
    ideal  model  delta    sigma   weight residual
    1.236  1.206  0.031 1.15e-02 7.56e+03 7.10e+00
  ... (remaining 43951 not shown)

  Histogram of bond angle deviations from ideal:
        0.00 -     1.06: 72594
        1.06 -     2.11: 5327
        2.11 -     3.17: 193
        3.17 -     4.23: 82
        4.23 -     5.29: 24
  Bond angle restraints: 78220
  Sorted by residual:
  angle pdb=" C   VAL B 976 "
        pdb=" CA  VAL B 976 "
        pdb=" CB  VAL B 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.55    3.67 1.38e+00 5.25e-01 7.09e+00
  angle pdb=" C   VAL D 976 "
        pdb=" CA  VAL D 976 "
        pdb=" CB  VAL D 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.55    3.67 1.38e+00 5.25e-01 7.07e+00
  angle pdb=" C   VAL C 976 "
        pdb=" CA  VAL C 976 "
        pdb=" CB  VAL C 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.56    3.66 1.38e+00 5.25e-01 7.02e+00
  angle pdb=" C   VAL A 976 "
        pdb=" CA  VAL A 976 "
        pdb=" CB  VAL A 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.57    3.65 1.38e+00 5.25e-01 6.99e+00
  angle pdb=" N   ALA A 650 "
        pdb=" CA  ALA A 650 "
        pdb=" CB  ALA A 650 "
      ideal   model   delta    sigma   weight residual
     114.27  110.00    4.27 1.64e+00 3.72e-01 6.79e+00
  ... (remaining 78215 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.86: 20510
       17.86 -    35.72: 890
       35.72 -    53.58: 343
       53.58 -    71.43: 97
       71.43 -    89.29: 12
  Dihedral angle restraints: 21852
    sinusoidal: 9356
      harmonic: 12496
  Sorted by residual:
  dihedral pdb=" CA  ILE B 904 "
           pdb=" C   ILE B 904 "
           pdb=" N   TYR B 905 "
           pdb=" CA  TYR B 905 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.81  -18.19     0      5.00e+00 4.00e-02 1.32e+01
  dihedral pdb=" CA  ILE D 904 "
           pdb=" C   ILE D 904 "
           pdb=" N   TYR D 905 "
           pdb=" CA  TYR D 905 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.81  -18.19     0      5.00e+00 4.00e-02 1.32e+01
  dihedral pdb=" CA  ILE C 904 "
           pdb=" C   ILE C 904 "
           pdb=" N   TYR C 905 "
           pdb=" CA  TYR C 905 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.81  -18.19     0      5.00e+00 4.00e-02 1.32e+01
  ... (remaining 21849 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.042: 3446
       0.042 -    0.085: 552
       0.085 -    0.127: 158
       0.127 -    0.170: 16
       0.170 -    0.212: 4
  Chirality restraints: 4176
  Sorted by residual:
  chirality pdb=" CA  LEU C 975 "
            pdb=" N   LEU C 975 "
            pdb=" C   LEU C 975 "
            pdb=" CB  LEU C 975 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.30    0.21 2.00e-01 2.50e+01 1.13e+00
  chirality pdb=" CA  LEU D 975 "
            pdb=" N   LEU D 975 "
            pdb=" C   LEU D 975 "
            pdb=" CB  LEU D 975 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.30    0.21 2.00e-01 2.50e+01 1.12e+00
  chirality pdb=" CA  LEU B 975 "
            pdb=" N   LEU B 975 "
            pdb=" C   LEU B 975 "
            pdb=" CB  LEU B 975 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.30    0.21 2.00e-01 2.50e+01 1.11e+00
  ... (remaining 4173 not shown)

  Planarity restraints: 7896
  Sorted by residual:
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" C   GLU C 906 "    0.026 5.00e-02 4.00e+02   3.89e-02 2.42e+00
        pdb=" N   PRO C 907 "   -0.067 5.00e-02 4.00e+02
        pdb=" CA  PRO C 907 "    0.019 5.00e-02 4.00e+02
        pdb=" CD  PRO C 907 "    0.022 5.00e-02 4.00e+02
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" C   GLU D 906 "   -0.026 5.00e-02 4.00e+02   3.88e-02 2.41e+00
        pdb=" N   PRO D 907 "    0.067 5.00e-02 4.00e+02
        pdb=" CA  PRO D 907 "   -0.019 5.00e-02 4.00e+02
        pdb=" CD  PRO D 907 "   -0.022 5.00e-02 4.00e+02
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" C   GLU A 906 "   -0.026 5.00e-02 4.00e+02   3.88e-02 2.40e+00
        pdb=" N   PRO A 907 "    0.067 5.00e-02 4.00e+02
        pdb=" CA  PRO A 907 "   -0.019 5.00e-02 4.00e+02
        pdb=" CD  PRO A 907 "   -0.022 5.00e-02 4.00e+02
  ... (remaining 7893 not shown)

  Histogram of nonbonded interaction distances:
        1.51 -     2.13: 1108
        2.13 -     2.75: 69898
        2.75 -     3.37: 114317
        3.37 -     3.98: 126966
        3.98 -     4.60: 199994
  Nonbonded interactions: 512283
  Sorted by model distance:
  nonbonded pdb=" O   LEU C 749 "
            pdb=" HH  TYR C 836 "
     model   vdw
     1.514 2.450
  nonbonded pdb=" O   LEU D 749 "
            pdb=" HH  TYR D 836 "
     model   vdw
     1.514 2.450
  nonbonded pdb=" O   LEU A 749 "
            pdb=" HH  TYR A 836 "
     model   vdw
     1.515 2.450
  nonbonded pdb=" O   LEU B 749 "
            pdb=" HH  TYR B 836 "
     model   vdw
     1.515 2.450
  nonbonded pdb=" O   GLY A 309 "
            pdb=" HG1 THR A 312 "
     model   vdw
     1.614 2.450
  ... (remaining 512278 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Find NCS groups from input model
Time spend for trying shortcut: 0.09
Found NCS groups:
ncs_group {
  reference = chain 'A'
  selection = chain 'B'
  selection = chain 'C'
  selection = chain 'D'
}

Set up NCS constraints
  No NCS constraints will be used in refinement.
Set refine NCS operators
Adjust number of macro_cycles
  Number of macro_cycles: 10
Reset NCS operators
Extract rigid body selections
Check and reset occupancies
  Occupancies: min=1.00 max=1.00 mean=1.00
Load rotamer database and sin/cos tables
Set ADP refinement strategy
  ADPs will be refined as group one per residue
Make a string to write initial .geo file
Internal consistency checks
Time:
  Set random seed:                         0.000
  Set model cs if undefined:               0.000
  Decide on map wrapping:                  0.000
  Normalize map: mean=0, sd=1:             1.050
  Set stop_for_unknowns flag:              0.000
  Assert model is a single copy model:     0.000
  Assert all atoms have isotropic ADPs:    0.000
  Construct map_model_manager:             0.330
  Extract box with map and model:          0.620
  Check model and map are aligned:         0.120
  Set scattering table:                    0.090
  Process input model:                     43.110
  Find NCS groups from input model:        0.320
  Set up NCS constraints:                  0.040
  Set refine NCS operators:                0.000
  Adjust number of macro_cycles:           0.000
  Reset NCS operators:                     0.000
  Extract rigid body selections:           0.000
  Check and reset occupancies:             0.010
  Load rotamer database and sin/cos tables:1.130
  Set ADP refinement strategy:             0.000
  Make a string to write initial .geo file:0.000
  Internal consistency checks:             0.000
  Total:   46.820
-------------------------------------------------------------------------------
Set refinement monitor
**********************
-------------------------------------------------------------------------------
Setup refinement engine
***********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7013
moved from start:          0.0000

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.009   0.717  24700  Z= 0.476
  Angle     :  0.574  24.116  33984  Z= 0.314
  Chirality :  0.036   0.212   4176
  Planarity :  0.003   0.039   4356
  Dihedral  : 10.708  85.622   7116
  Min Nonbonded Distance : 1.872

Molprobity Statistics.
  All-atom Clashscore : 8.44
  Ramachandran Plot:
    Outliers :  0.00 %
    Allowed  :  4.12 %
    Favored  : 95.88 %
  Rotamer:
    Outliers :  0.96 %
    Allowed  : 11.51 %
    Favored  : 87.53 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.67 (0.15), residues: 3588
  helix:  2.39 (0.11), residues: 2344
  sheet:  0.20 (0.48), residues: 156
  loop : -1.76 (0.17), residues: 1088

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.005   0.000   ARG B 624 
 TYR   0.012   0.001   TYR A 826 
 PHE   0.011   0.001   PHE B 735 
 TRP   0.007   0.001   TRP D 877 
 HIS   0.002   0.001   HIS A 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00247 (24692)
  covalent geometry    : angle       0.46076 (33968)
  SS BOND              : bond        0.50660 (    8)
  SS BOND              : angle      15.76003 (   16)
  hydrogen bonds       : bond        0.15619 ( 1737)
  hydrogen bonds       : angle       5.33363 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  538 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 16
    poor density    : 522
  time to evaluate  : 0.772 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7745 (tpp) cc_final: 0.7464 (tpt)
REVERT: A  781 ASP cc_start: 0.7809 (t0) cc_final: 0.7605 (m-30)
REVERT: A  843 LEU cc_start: 0.8506 (tp) cc_final: 0.8304 (tp)
REVERT: A  850 SER cc_start: 0.8003 (t) cc_final: 0.7586 (p)
REVERT: A  859 MET cc_start: 0.8651 (ppp) cc_final: 0.8434 (ppp)
REVERT: A  911 MET cc_start: 0.7586 (pp-130) cc_final: 0.7310 (tmm)
REVERT: A  979 PHE cc_start: 0.8840 (OUTLIER) cc_final: 0.8378 (m-80)
REVERT: B  781 ASP cc_start: 0.7829 (t0) cc_final: 0.7627 (m-30)
REVERT: B  843 LEU cc_start: 0.8525 (tp) cc_final: 0.8308 (tp)
REVERT: B  850 SER cc_start: 0.8012 (t) cc_final: 0.7593 (p)
REVERT: B  968 ASN cc_start: 0.8331 (t0) cc_final: 0.8066 (t0)
REVERT: B  979 PHE cc_start: 0.8813 (OUTLIER) cc_final: 0.8477 (m-80)
REVERT: C  781 ASP cc_start: 0.7830 (t0) cc_final: 0.7629 (m-30)
REVERT: C  843 LEU cc_start: 0.8520 (tp) cc_final: 0.8309 (tp)
REVERT: C  850 SER cc_start: 0.8008 (t) cc_final: 0.7590 (p)
REVERT: C  968 ASN cc_start: 0.8329 (t0) cc_final: 0.8056 (t0)
REVERT: C  979 PHE cc_start: 0.8811 (OUTLIER) cc_final: 0.8472 (m-80)
REVERT: D  781 ASP cc_start: 0.7829 (t0) cc_final: 0.7627 (m-30)
REVERT: D  843 LEU cc_start: 0.8519 (tp) cc_final: 0.8301 (tp)
REVERT: D  850 SER cc_start: 0.8005 (t) cc_final: 0.7589 (p)
REVERT: D  968 ASN cc_start: 0.8329 (t0) cc_final: 0.8047 (t0)
REVERT: D  979 PHE cc_start: 0.8804 (OUTLIER) cc_final: 0.8470 (m-80)
  outliers start: 16
  outliers final: 12
  residues processed: 533
  average time/residue: 0.2392
  time to fit residues: 212.0761
Evaluate side-chains
  383 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 16
    poor density    : 367
  time to evaluate  : 0.878 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=5.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 197 optimal weight:   20.0000
   chunk 215 optimal weight:    5.9990
   chunk 20 optimal weight:    8.9990
   chunk 132 optimal weight:    5.9990
   chunk 261 optimal weight:    0.9980
   chunk 248 optimal weight:    8.9990
   chunk 207 optimal weight:    6.9990
   chunk 155 optimal weight:    0.7980
   chunk 244 optimal weight:    9.9990
   chunk 183 optimal weight:    0.3980
   chunk 298 optimal weight:   20.0000
   overall best weight:    2.8384

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 886 GLN
A 914 GLN
** A 968 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**
B 886 GLN
C 886 GLN
C 914 GLN
D 886 GLN
D 914 GLN

Total number of N/Q/H flips: 7

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4064 r_free = 0.4064 target = 0.119604 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 45)----------------|
| r_work = 0.3758 r_free = 0.3758 target = 0.101866 restraints weight = 281528.793|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 36)----------------|
| r_work = 0.3817 r_free = 0.3817 target = 0.105307 restraints weight = 139618.973|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 40)----------------|
| r_work = 0.3855 r_free = 0.3855 target = 0.107506 restraints weight = 85205.613|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 34)----------------|
| r_work = 0.3880 r_free = 0.3880 target = 0.108932 restraints weight = 60333.613|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 40)----------------|
| r_work = 0.3896 r_free = 0.3896 target = 0.109891 restraints weight = 47591.079|
|-----------------------------------------------------------------------------|
r_work (final): 0.3889
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.6962
moved from start:          0.2700

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.058  24700  Z= 0.173
  Angle     :  0.534   5.826  33984  Z= 0.302
  Chirality :  0.037   0.147   4176
  Planarity :  0.004   0.052   4356
  Dihedral  :  3.722  17.965   3792
  Min Nonbonded Distance : 2.209

Molprobity Statistics.
  All-atom Clashscore : 9.66
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  3.87 %
    Favored  : 96.01 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  1.50 %
    Favored  : 98.50 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.69 (0.14), residues: 3588
  helix:  2.31 (0.11), residues: 2376
  sheet:  0.57 (0.46), residues: 176
  loop : -1.74 (0.18), residues: 1036

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.005   0.001   ARG A 816 
 TYR   0.018   0.001   TYR D 836 
 PHE   0.028   0.002   PHE D 760 
 TRP   0.007   0.001   TRP D 453 
 HIS   0.010   0.002   HIS B 761 

Details of bonding type rmsd
  covalent geometry    : bond        0.00346 (24692)
  covalent geometry    : angle       0.53073 (33968)
  SS BOND              : bond        0.00634 (    8)
  SS BOND              : angle       2.59843 (   16)
  hydrogen bonds       : bond        0.05473 ( 1737)
  hydrogen bonds       : angle       4.46162 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 2 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  447 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 447
  time to evaluate  : 1.063 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  435 GLU cc_start: 0.8834 (tp30) cc_final: 0.8608 (pt0)
REVERT: A  801 MET cc_start: 0.8024 (ptm) cc_final: 0.7748 (ppp)
REVERT: A  838 ILE cc_start: 0.8944 (mm) cc_final: 0.8737 (mm)
REVERT: A  859 MET cc_start: 0.8836 (ppp) cc_final: 0.8528 (ppp)
REVERT: A  961 CYS cc_start: 0.8570 (m) cc_final: 0.8222 (t)
REVERT: B  435 GLU cc_start: 0.8842 (tp30) cc_final: 0.8611 (pt0)
REVERT: B  801 MET cc_start: 0.8026 (ptm) cc_final: 0.7758 (ppp)
REVERT: C  435 GLU cc_start: 0.8826 (tp30) cc_final: 0.8601 (pt0)
REVERT: C  801 MET cc_start: 0.8029 (ptm) cc_final: 0.7761 (ppp)
REVERT: D  435 GLU cc_start: 0.8845 (tp30) cc_final: 0.8611 (pt0)
REVERT: D  801 MET cc_start: 0.8020 (ptm) cc_final: 0.7757 (ppp)
  outliers start: 0
  outliers final: 0
  residues processed: 447
  average time/residue: 0.2510
  time to fit residues: 187.5186
Evaluate side-chains
  344 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 344
  time to evaluate  : 0.882 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=4.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 22 optimal weight:   30.0000
   chunk 36 optimal weight:   10.0000
   chunk 259 optimal weight:    5.9990
   chunk 231 optimal weight:    7.9990
   chunk 306 optimal weight:    4.9990
   chunk 315 optimal weight:    3.9990
   chunk 326 optimal weight:    6.9990
   chunk 27 optimal weight:    5.9990
   chunk 146 optimal weight:    0.0770
   chunk 303 optimal weight:    7.9990
   chunk 18 optimal weight:    5.9990
   overall best weight:    4.2146

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
B 914 GLN

Total number of N/Q/H flips: 1

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4049 r_free = 0.4049 target = 0.118495 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 47)----------------|
| r_work = 0.3745 r_free = 0.3745 target = 0.101241 restraints weight = 283427.725|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 43)----------------|
| r_work = 0.3801 r_free = 0.3801 target = 0.104497 restraints weight = 141798.455|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 29)----------------|
| r_work = 0.3837 r_free = 0.3837 target = 0.106611 restraints weight = 87176.360|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 48)----------------|
| r_work = 0.3862 r_free = 0.3862 target = 0.108012 restraints weight = 61871.004|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 30)----------------|
| r_work = 0.3875 r_free = 0.3875 target = 0.108794 restraints weight = 48540.259|
|-----------------------------------------------------------------------------|
r_work (final): 0.3863
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7054
moved from start:          0.3269

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.004   0.041  24700  Z= 0.194
  Angle     :  0.518   5.442  33984  Z= 0.301
  Chirality :  0.036   0.143   4176
  Planarity :  0.004   0.043   4356
  Dihedral  :  3.856  18.021   3792
  Min Nonbonded Distance : 2.183

Molprobity Statistics.
  All-atom Clashscore : 8.74
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  4.49 %
    Favored  : 95.40 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  2.04 %
    Favored  : 97.96 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.32 (0.14), residues: 3588
  helix:  2.05 (0.11), residues: 2376
  sheet:  0.22 (0.43), residues: 176
  loop : -1.91 (0.17), residues: 1036

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.003   0.001   ARG D 624 
 TYR   0.016   0.001   TYR A 836 
 PHE   0.016   0.001   PHE D 912 
 TRP   0.008   0.001   TRP C 380 
 HIS   0.005   0.002   HIS A 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00387 (24692)
  covalent geometry    : angle       0.51421 (33968)
  SS BOND              : bond        0.00732 (    8)
  SS BOND              : angle       2.76298 (   16)
  hydrogen bonds       : bond        0.05069 ( 1737)
  hydrogen bonds       : angle       4.50282 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 3 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  378 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 378
  time to evaluate  : 0.958 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  801 MET cc_start: 0.8141 (ptm) cc_final: 0.7801 (ppp)
REVERT: A  850 SER cc_start: 0.8056 (t) cc_final: 0.7566 (p)
REVERT: A  859 MET cc_start: 0.8930 (ppp) cc_final: 0.8606 (ppp)
REVERT: B  758 MET cc_start: 0.8059 (tpp) cc_final: 0.7504 (tpp)
REVERT: B  801 MET cc_start: 0.8224 (ptm) cc_final: 0.7942 (ppp)
REVERT: B  850 SER cc_start: 0.8129 (t) cc_final: 0.7588 (p)
REVERT: C  758 MET cc_start: 0.8061 (tpp) cc_final: 0.7506 (tpp)
REVERT: C  801 MET cc_start: 0.8224 (ptm) cc_final: 0.7945 (ppp)
REVERT: C  850 SER cc_start: 0.8135 (t) cc_final: 0.7595 (p)
REVERT: D  801 MET cc_start: 0.8215 (ptm) cc_final: 0.7983 (ppp)
REVERT: D  850 SER cc_start: 0.8174 (t) cc_final: 0.7648 (p)
  outliers start: 0
  outliers final: 0
  residues processed: 378
  average time/residue: 0.2700
  time to fit residues: 173.5490
Evaluate side-chains
  330 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 330
  time to evaluate  : 1.052 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=4.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 46 optimal weight:    6.9990
   chunk 233 optimal weight:    0.7980
   chunk 295 optimal weight:   30.0000
   chunk 204 optimal weight:   30.0000
   chunk 250 optimal weight:    0.6980
   chunk 25 optimal weight:   20.0000
   chunk 33 optimal weight:    4.9990
   chunk 59 optimal weight:    6.9990
   chunk 147 optimal weight:    0.0870
   chunk 86 optimal weight:    8.9990
   chunk 363 optimal weight:   10.0000
   overall best weight:    2.7162

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

No N/Q/H corrections needed this macrocycle
-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4049 r_free = 0.4049 target = 0.118512 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 40)----------------|
| r_work = 0.3749 r_free = 0.3749 target = 0.101533 restraints weight = 283925.400|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 35)----------------|
| r_work = 0.3805 r_free = 0.3805 target = 0.104745 restraints weight = 145201.662|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 38)----------------|
| r_work = 0.3842 r_free = 0.3842 target = 0.106832 restraints weight = 90145.005|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 42)----------------|
| r_work = 0.3865 r_free = 0.3865 target = 0.108191 restraints weight = 64212.304|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 41)----------------|
| r_work = 0.3882 r_free = 0.3882 target = 0.109123 restraints weight = 50591.033|
|-----------------------------------------------------------------------------|
r_work (final): 0.3868
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7060
moved from start:          0.3549

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.042  24700  Z= 0.153
  Angle     :  0.497   5.710  33984  Z= 0.287
  Chirality :  0.036   0.138   4176
  Planarity :  0.003   0.042   4356
  Dihedral  :  3.789  17.796   3792
  Min Nonbonded Distance : 2.220

Molprobity Statistics.
  All-atom Clashscore : 8.95
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  4.60 %
    Favored  : 95.29 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  1.92 %
    Favored  : 98.08 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.40 (0.14), residues: 3588
  helix:  2.15 (0.11), residues: 2376
  sheet:  0.11 (0.41), residues: 176
  loop : -1.97 (0.17), residues: 1036

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.004   0.001   ARG D 624 
 TYR   0.013   0.001   TYR A 999 
 PHE   0.016   0.001   PHE A 874 
 TRP   0.008   0.001   TRP C 380 
 HIS   0.004   0.001   HIS D 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00307 (24692)
  covalent geometry    : angle       0.49512 (33968)
  SS BOND              : bond        0.00241 (    8)
  SS BOND              : angle       2.01796 (   16)
  hydrogen bonds       : bond        0.04713 ( 1737)
  hydrogen bonds       : angle       4.33581 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 4 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  367 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 367
  time to evaluate  : 1.156 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  859 MET cc_start: 0.8838 (ppp) cc_final: 0.8507 (ppp)
REVERT: B  801 MET cc_start: 0.8336 (ptm) cc_final: 0.7937 (ppp)
REVERT: B  878 MET cc_start: 0.7522 (ttm) cc_final: 0.7092 (tmm)
REVERT: C  801 MET cc_start: 0.8328 (ptm) cc_final: 0.7936 (ppp)
REVERT: C  878 MET cc_start: 0.7529 (ttm) cc_final: 0.7086 (tmm)
REVERT: D  878 MET cc_start: 0.7553 (ttm) cc_final: 0.7134 (tmm)
  outliers start: 0
  outliers final: 0
  residues processed: 367
  average time/residue: 0.2715
  time to fit residues: 168.5806
Evaluate side-chains
  316 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 316
  time to evaluate  : 1.093 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=3.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 23 optimal weight:    7.9990
   chunk 257 optimal weight:    6.9990
   chunk 271 optimal weight:    0.8980
   chunk 36 optimal weight:    9.9990
   chunk 289 optimal weight:   10.0000
   chunk 197 optimal weight:   20.0000
   chunk 162 optimal weight:    0.7980
   chunk 269 optimal weight:    5.9990
   chunk 243 optimal weight:    6.9990
   chunk 62 optimal weight:    9.9990
   chunk 255 optimal weight:    6.9990
   overall best weight:    4.3386

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** A 968 ASN ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 0

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4026 r_free = 0.4026 target = 0.116909 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 45)----------------|
| r_work = 0.3708 r_free = 0.3708 target = 0.099108 restraints weight = 289712.552|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 38)----------------|
| r_work = 0.3766 r_free = 0.3766 target = 0.102440 restraints weight = 143098.707|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 36)----------------|
| r_work = 0.3805 r_free = 0.3805 target = 0.104624 restraints weight = 87405.367|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 38)----------------|
| r_work = 0.3830 r_free = 0.3830 target = 0.106023 restraints weight = 61825.467|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 28)----------------|
| r_work = 0.3844 r_free = 0.3844 target = 0.106889 restraints weight = 48859.639|
|-----------------------------------------------------------------------------|
r_work (final): 0.3826
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7103
moved from start:          0.3870

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.004   0.041  24700  Z= 0.203
  Angle     :  0.523   5.599  33984  Z= 0.303
  Chirality :  0.036   0.147   4176
  Planarity :  0.004   0.047   4356
  Dihedral  :  3.939  17.268   3792
  Min Nonbonded Distance : 2.173

Molprobity Statistics.
  All-atom Clashscore : 8.85
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.32 %
    Favored  : 94.57 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  2.16 %
    Favored  : 97.84 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.19 (0.14), residues: 3588
  helix:  1.95 (0.11), residues: 2392
  sheet: -0.16 (0.39), residues: 176
  loop : -1.97 (0.17), residues: 1020

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.004   0.001   ARG C 624 
 TYR   0.013   0.001   TYR C 999 
 PHE   0.021   0.002   PHE D1082 
 TRP   0.009   0.001   TRP C 380 
 HIS   0.005   0.002   HIS D 667 

Details of bonding type rmsd
  covalent geometry    : bond        0.00392 (24692)
  covalent geometry    : angle       0.51955 (33968)
  SS BOND              : bond        0.00148 (    8)
  SS BOND              : angle       2.73290 (   16)
  hydrogen bonds       : bond        0.04644 ( 1737)
  hydrogen bonds       : angle       4.45008 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 5 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  344 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 344
  time to evaluate  : 1.296 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  788 MET cc_start: 0.8940 (mmm) cc_final: 0.8720 (mtt)
REVERT: A  859 MET cc_start: 0.8982 (ppp) cc_final: 0.8613 (ppp)
REVERT: B  758 MET cc_start: 0.8062 (tpp) cc_final: 0.7431 (tpp)
REVERT: B  788 MET cc_start: 0.8959 (mmm) cc_final: 0.8729 (mtt)
REVERT: B  878 MET cc_start: 0.7754 (ttm) cc_final: 0.7336 (tmm)
REVERT: C  758 MET cc_start: 0.8074 (tpp) cc_final: 0.7447 (tpp)
REVERT: C  788 MET cc_start: 0.8954 (mmm) cc_final: 0.8729 (mtt)
REVERT: C  878 MET cc_start: 0.7760 (ttm) cc_final: 0.7346 (tmm)
REVERT: D  788 MET cc_start: 0.8956 (mmm) cc_final: 0.8728 (mtt)
  outliers start: 0
  outliers final: 0
  residues processed: 344
  average time/residue: 0.2811
  time to fit residues: 164.2841
Evaluate side-chains
  316 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 316
  time to evaluate  : 1.552 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=3.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 341 optimal weight:    6.9990
   chunk 185 optimal weight:    9.9990
   chunk 63 optimal weight:    5.9990
   chunk 2 optimal weight:   50.0000
   chunk 9 optimal weight:   10.0000
   chunk 14 optimal weight:    0.0970
   chunk 53 optimal weight:   20.0000
   chunk 54 optimal weight:    0.2980
   chunk 83 optimal weight:    6.9990
   chunk 45 optimal weight:    9.9990
   chunk 302 optimal weight:    7.9990
   overall best weight:    4.0784

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 968 ASN

Total number of N/Q/H flips: 1

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4018 r_free = 0.4018 target = 0.116554 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 43)----------------|
| r_work = 0.3699 r_free = 0.3699 target = 0.098886 restraints weight = 290237.663|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 35)----------------|
| r_work = 0.3757 r_free = 0.3757 target = 0.102116 restraints weight = 145144.470|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 43)----------------|
| r_work = 0.3796 r_free = 0.3796 target = 0.104244 restraints weight = 89793.616|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 40)----------------|
| r_work = 0.3820 r_free = 0.3820 target = 0.105590 restraints weight = 63785.442|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 33)----------------|
| r_work = 0.3832 r_free = 0.3832 target = 0.106353 restraints weight = 50519.804|
|-----------------------------------------------------------------------------|
r_work (final): 0.3822
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7118
moved from start:          0.4225

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.035  24700  Z= 0.175
  Angle     :  0.509   6.119  33984  Z= 0.292
  Chirality :  0.035   0.139   4176
  Planarity :  0.003   0.046   4356
  Dihedral  :  3.964  17.580   3792
  Min Nonbonded Distance : 2.179

Molprobity Statistics.
  All-atom Clashscore : 8.92
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.49 %
    Favored  : 94.40 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  1.14 %
    Favored  : 98.86 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.14 (0.14), residues: 3588
  helix:  1.95 (0.11), residues: 2392
  sheet: -0.30 (0.38), residues: 176
  loop : -2.05 (0.17), residues: 1020

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.003   0.001   ARG B 842 
 TYR   0.012   0.001   TYR A 999 
 PHE   0.014   0.002   PHE C1000 
 TRP   0.009   0.001   TRP C 380 
 HIS   0.004   0.001   HIS A 667 

Details of bonding type rmsd
  covalent geometry    : bond        0.00347 (24692)
  covalent geometry    : angle       0.50317 (33968)
  SS BOND              : bond        0.01000 (    8)
  SS BOND              : angle       3.50927 (   16)
  hydrogen bonds       : bond        0.04395 ( 1737)
  hydrogen bonds       : angle       4.39275 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 6 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  356 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 356
  time to evaluate  : 1.236 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  859 MET cc_start: 0.9005 (ppp) cc_final: 0.8605 (ppp)
REVERT: A  968 ASN cc_start: 0.8632 (t0) cc_final: 0.8412 (t0)
REVERT: B  788 MET cc_start: 0.8981 (mmm) cc_final: 0.8721 (mtt)
REVERT: B  859 MET cc_start: 0.8947 (ppp) cc_final: 0.8745 (ppp)
REVERT: C  788 MET cc_start: 0.8981 (mmm) cc_final: 0.8722 (mtt)
REVERT: C  859 MET cc_start: 0.8949 (ppp) cc_final: 0.8744 (ppp)
REVERT: D  788 MET cc_start: 0.8980 (mmm) cc_final: 0.8722 (mtt)
  outliers start: 0
  outliers final: 0
  residues processed: 356
  average time/residue: 0.2744
  time to fit residues: 165.0168
Evaluate side-chains
  313 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 313
  time to evaluate  : 1.269 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=2.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 132 optimal weight:    4.9990
   chunk 182 optimal weight:   50.0000
   chunk 262 optimal weight:    4.9990
   chunk 172 optimal weight:    4.9990
   chunk 194 optimal weight:   10.0000
   chunk 91 optimal weight:   50.0000
   chunk 178 optimal weight:    8.9990
   chunk 224 optimal weight:    1.9990
   chunk 60 optimal weight:    0.9980
   chunk 36 optimal weight:   10.0000
   chunk 171 optimal weight:    0.8980
   overall best weight:    2.7786

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** A 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 0

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4017 r_free = 0.4017 target = 0.116706 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 42)----------------|
| r_work = 0.3711 r_free = 0.3711 target = 0.099492 restraints weight = 283715.767|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 37)----------------|
| r_work = 0.3766 r_free = 0.3766 target = 0.102632 restraints weight = 146207.204|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 38)----------------|
| r_work = 0.3802 r_free = 0.3802 target = 0.104646 restraints weight = 91445.887|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 32)----------------|
| r_work = 0.3822 r_free = 0.3822 target = 0.105855 restraints weight = 65769.157|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 41)----------------|
| r_work = 0.3840 r_free = 0.3840 target = 0.106811 restraints weight = 52787.248|
|-----------------------------------------------------------------------------|
r_work (final): 0.3830
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7131
moved from start:          0.4409

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.031  24700  Z= 0.142
  Angle     :  0.490   6.116  33984  Z= 0.281
  Chirality :  0.035   0.134   4176
  Planarity :  0.003   0.043   4356
  Dihedral  :  3.881  16.730   3792
  Min Nonbonded Distance : 2.198

Molprobity Statistics.
  All-atom Clashscore : 8.26
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.18 %
    Favored  : 94.70 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.96 %
    Favored  : 99.04 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.27 (0.14), residues: 3588
  helix:  2.07 (0.11), residues: 2388
  sheet: -0.24 (0.38), residues: 176
  loop : -2.04 (0.17), residues: 1024

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.002   0.000   ARG B 885 
 TYR   0.012   0.001   TYR C 999 
 PHE   0.024   0.001   PHE D 779 
 TRP   0.015   0.001   TRP B 798 
 HIS   0.008   0.001   HIS A 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00287 (24692)
  covalent geometry    : angle       0.48850 (33968)
  SS BOND              : bond        0.00435 (    8)
  SS BOND              : angle       1.95115 (   16)
  hydrogen bonds       : bond        0.04290 ( 1737)
  hydrogen bonds       : angle       4.23820 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 7 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  350 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 350
  time to evaluate  : 1.252 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  788 MET cc_start: 0.8919 (mmm) cc_final: 0.8717 (mtt)
REVERT: A  968 ASN cc_start: 0.8600 (t0) cc_final: 0.8374 (t0)
REVERT: B  788 MET cc_start: 0.8929 (mmm) cc_final: 0.8716 (mtt)
REVERT: C  788 MET cc_start: 0.8923 (mmm) cc_final: 0.8715 (mtt)
REVERT: D  788 MET cc_start: 0.8922 (mmm) cc_final: 0.8715 (mtt)
  outliers start: 0
  outliers final: 0
  residues processed: 350
  average time/residue: 0.2921
  time to fit residues: 173.0268
Evaluate side-chains
  306 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 306
  time to evaluate  : 1.222 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=2.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 191 optimal weight:   10.0000
   chunk 221 optimal weight:    5.9990
   chunk 20 optimal weight:    9.9990
   chunk 180 optimal weight:    8.9990
   chunk 126 optimal weight:    8.9990
   chunk 302 optimal weight:    0.9980
   chunk 64 optimal weight:    9.9990
   chunk 218 optimal weight:    9.9990
   chunk 251 optimal weight:    2.9990
   chunk 25 optimal weight:   20.0000
   chunk 28 optimal weight:    3.9990
   overall best weight:    4.5988

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 655 ASN
B 655 ASN
C 655 ASN
** C 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
D 655 ASN
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 4

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4007 r_free = 0.4007 target = 0.115940 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 41)----------------|
| r_work = 0.3688 r_free = 0.3688 target = 0.098317 restraints weight = 292802.370|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 37)----------------|
| r_work = 0.3748 r_free = 0.3748 target = 0.101603 restraints weight = 146036.080|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 36)----------------|
| r_work = 0.3786 r_free = 0.3786 target = 0.103694 restraints weight = 89911.383|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 37)----------------|
| r_work = 0.3811 r_free = 0.3811 target = 0.105060 restraints weight = 64184.773|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 49)----------------|
| r_work = 0.3827 r_free = 0.3827 target = 0.105943 restraints weight = 50722.488|
|-----------------------------------------------------------------------------|
r_work (final): 0.3816
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7134
moved from start:          0.4596

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.004   0.033  24700  Z= 0.203
  Angle     :  0.522   5.925  33984  Z= 0.301
  Chirality :  0.035   0.139   4176
  Planarity :  0.004   0.085   4356
  Dihedral  :  4.036  17.334   3792
  Min Nonbonded Distance : 2.174

Molprobity Statistics.
  All-atom Clashscore : 9.73
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  6.05 %
    Favored  : 93.84 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.30 %
    Favored  : 99.70 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.03 (0.14), residues: 3588
  helix:  1.89 (0.11), residues: 2384
  sheet: -0.28 (0.38), residues: 176
  loop : -2.16 (0.17), residues: 1028

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.009   0.001   ARG A 998 
 TYR   0.012   0.001   TYR A 999 
 PHE   0.013   0.001   PHE A 779 
 TRP   0.015   0.001   TRP C 798 
 HIS   0.011   0.002   HIS A 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00403 (24692)
  covalent geometry    : angle       0.52057 (33968)
  SS BOND              : bond        0.00355 (    8)
  SS BOND              : angle       1.57688 (   16)
  hydrogen bonds       : bond        0.04369 ( 1737)
  hydrogen bonds       : angle       4.42975 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 8 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  345 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 345
  time to evaluate  : 1.393 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.8197 (tpp) cc_final: 0.7772 (tpp)
REVERT: A  788 MET cc_start: 0.8979 (mmm) cc_final: 0.8747 (mtm)
REVERT: B  788 MET cc_start: 0.8989 (mmm) cc_final: 0.8747 (mtm)
REVERT: C  788 MET cc_start: 0.8988 (mmm) cc_final: 0.8746 (mtm)
REVERT: D  788 MET cc_start: 0.8986 (mmm) cc_final: 0.8746 (mtm)
  outliers start: 0
  outliers final: 0
  residues processed: 345
  average time/residue: 0.2726
  time to fit residues: 158.4769
Evaluate side-chains
  306 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 306
  time to evaluate  : 1.215 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 290 optimal weight:   10.0000
   chunk 254 optimal weight:    5.9990
   chunk 164 optimal weight:    3.9990
   chunk 161 optimal weight:    3.9990
   chunk 73 optimal weight:    4.9990
   chunk 98 optimal weight:   20.0000
   chunk 266 optimal weight:    0.0060
   chunk 23 optimal weight:    0.7980
   chunk 146 optimal weight:   20.0000
   chunk 215 optimal weight:    0.9990
   chunk 35 optimal weight:    1.9990
   overall best weight:    1.5602

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** C 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 0

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4021 r_free = 0.4021 target = 0.116909 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 44)----------------|
| r_work = 0.3705 r_free = 0.3705 target = 0.099227 restraints weight = 286586.323|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 36)----------------|
| r_work = 0.3764 r_free = 0.3764 target = 0.102581 restraints weight = 143087.035|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 39)----------------|
| r_work = 0.3803 r_free = 0.3803 target = 0.104710 restraints weight = 87955.334|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 37)----------------|
| r_work = 0.3828 r_free = 0.3828 target = 0.106084 restraints weight = 62498.103|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 42)----------------|
| r_work = 0.3844 r_free = 0.3844 target = 0.106990 restraints weight = 49392.742|
|-----------------------------------------------------------------------------|
r_work (final): 0.3838
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7086
moved from start:          0.4601

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.002   0.027  24700  Z= 0.115
  Angle     :  0.466   5.969  33984  Z= 0.262
  Chirality :  0.035   0.134   4176
  Planarity :  0.004   0.072   4356
  Dihedral  :  3.831  16.927   3792
  Min Nonbonded Distance : 2.220

Molprobity Statistics.
  All-atom Clashscore : 8.39
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.38 %
    Favored  : 94.51 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.90 %
    Favored  : 99.10 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.46 (0.14), residues: 3588
  helix:  2.25 (0.11), residues: 2384
  sheet: -0.13 (0.38), residues: 176
  loop : -2.07 (0.17), residues: 1028

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.004   0.000   ARG C 998 
 TYR   0.012   0.001   TYR C 999 
 PHE   0.012   0.001   PHE C 809 
 TRP   0.009   0.001   TRP D 898 
 HIS   0.008   0.001   HIS D 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00236 (24692)
  covalent geometry    : angle       0.46589 (33968)
  SS BOND              : bond        0.00224 (    8)
  SS BOND              : angle       1.12956 (   16)
  hydrogen bonds       : bond        0.04046 ( 1737)
  hydrogen bonds       : angle       4.08503 ( 5163)

*********************** REFINEMENT MACRO_CYCLE 9 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  336 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 336
  time to evaluate  : 1.423 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.8112 (tpp) cc_final: 0.7705 (tpp)
REVERT: A  788 MET cc_start: 0.8979 (mmm) cc_final: 0.8717 (mtt)
REVERT: B  788 MET cc_start: 0.8979 (mmm) cc_final: 0.8718 (mtt)
REVERT: C  788 MET cc_start: 0.8979 (mmm) cc_final: 0.8717 (mtt)
REVERT: D  788 MET cc_start: 0.8975 (mmm) cc_final: 0.8718 (mtt)
  outliers start: 0
  outliers final: 0
  residues processed: 336
  average time/residue: 0.2871
  time to fit residues: 163.3396
Evaluate side-chains
  311 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 311
  time to evaluate  : 1.278 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 233 optimal weight:    4.9990
   chunk 270 optimal weight:    8.9990
   chunk 133 optimal weight:    3.9990
   chunk 154 optimal weight:    0.0470
   chunk 109 optimal weight:    9.9990
   chunk 307 optimal weight:    6.9990
   chunk 252 optimal weight:    0.7980
   chunk 350 optimal weight:    5.9990
   chunk 163 optimal weight:    1.9990
   chunk 104 optimal weight:   10.0000
   chunk 120 optimal weight:    6.9990
   overall best weight:    2.3684

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 792 ASN
B 792 ASN
C 792 ASN
** C 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
D 792 ASN
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 4

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4024 r_free = 0.4024 target = 0.116586 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 46)----------------|
| r_work = 0.3708 r_free = 0.3708 target = 0.099036 restraints weight = 290009.477|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 38)----------------|
| r_work = 0.3768 r_free = 0.3768 target = 0.102375 restraints weight = 144328.851|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 39)----------------|
| r_work = 0.3806 r_free = 0.3806 target = 0.104509 restraints weight = 88258.519|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 42)----------------|
| r_work = 0.3831 r_free = 0.3831 target = 0.105872 restraints weight = 62636.070|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 37)----------------|
| r_work = 0.3845 r_free = 0.3845 target = 0.106715 restraints weight = 49407.894|
|-----------------------------------------------------------------------------|
r_work (final): 0.3833
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7091
moved from start:          0.4734

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.025  24700  Z= 0.131
  Angle     :  0.491   8.200  33984  Z= 0.281
  Chirality :  0.035   0.134   4176
  Planarity :  0.004   0.073   4356
  Dihedral  :  3.834  16.799   3792
  Min Nonbonded Distance : 2.223

Molprobity Statistics.
  All-atom Clashscore : 8.42
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.55 %
    Favored  : 94.34 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.54 %
    Favored  : 99.46 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.48 (0.14), residues: 3588
  helix:  2.25 (0.11), residues: 2384
  sheet: -0.03 (0.39), residues: 176
  loop : -2.04 (0.17), residues: 1028

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.005   0.000   ARG A 998 
 TYR   0.012   0.001   TYR C 999 
 PHE   0.022   0.001   PHE C 779 
 TRP   0.031   0.001   TRP A 994 
 HIS   0.008   0.001   HIS D 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00267 (24692)
  covalent geometry    : angle       0.49028 (33968)
  SS BOND              : bond        0.00264 (    8)
  SS BOND              : angle       1.59713 (   16)
  hydrogen bonds       : bond        0.04091 ( 1737)
  hydrogen bonds       : angle       4.11150 ( 5163)

********************** REFINEMENT MACRO_CYCLE 10 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  339 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 339
  time to evaluate  : 1.345 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.8134 (tpp) cc_final: 0.7534 (tpp)
REVERT: A  788 MET cc_start: 0.8981 (mmm) cc_final: 0.8772 (mtm)
REVERT: B  788 MET cc_start: 0.8981 (mmm) cc_final: 0.8763 (mtm)
REVERT: C  788 MET cc_start: 0.8983 (mmm) cc_final: 0.8764 (mtm)
REVERT: D  788 MET cc_start: 0.8979 (mmm) cc_final: 0.8763 (mtm)
  outliers start: 0
  outliers final: 0
  residues processed: 339
  average time/residue: 0.2867
  time to fit residues: 164.5583
Evaluate side-chains
  309 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 309
  time to evaluate  : 1.243 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 232 optimal weight:    3.9990
   chunk 109 optimal weight:    8.9990
   chunk 214 optimal weight:    7.9990
   chunk 10 optimal weight:    4.9990
   chunk 330 optimal weight:    0.8980
   chunk 115 optimal weight:    9.9990
   chunk 31 optimal weight:    9.9990
   chunk 180 optimal weight:    4.9990
   chunk 329 optimal weight:    3.9990
   chunk 64 optimal weight:   10.0000
   chunk 363 optimal weight:    8.9990
   overall best weight:    3.7788

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** C 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 0

-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4002 r_free = 0.4002 target = 0.115918 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 46)----------------|
| r_work = 0.3687 r_free = 0.3687 target = 0.098522 restraints weight = 292520.553|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 34)----------------|
| r_work = 0.3746 r_free = 0.3746 target = 0.101782 restraints weight = 145726.621|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 41)----------------|
| r_work = 0.3784 r_free = 0.3784 target = 0.103865 restraints weight = 89507.571|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 4; iterations = 40)----------------|
| r_work = 0.3808 r_free = 0.3808 target = 0.105194 restraints weight = 63551.253|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 5; iterations = 38)----------------|
| r_work = 0.3820 r_free = 0.3820 target = 0.105959 restraints weight = 50313.349|
|-----------------------------------------------------------------------------|
r_work (final): 0.3812
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7135
moved from start:          0.4924

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.027  24700  Z= 0.172
  Angle     :  0.502   6.181  33984  Z= 0.289
  Chirality :  0.035   0.137   4176
  Planarity :  0.004   0.081   4356
  Dihedral  :  3.932  17.765   3792
  Min Nonbonded Distance : 2.190

Molprobity Statistics.
  All-atom Clashscore : 8.90
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  6.47 %
    Favored  : 93.42 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.72 %
    Favored  : 99.28 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z values with (uncertainties):
Interpretation: poor |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores below are scaled independently, so they aren not related in a simple way.
  whole:  1.26 (0.14), residues: 3588
  helix:  2.06 (0.11), residues: 2388
  sheet: -0.14 (0.39), residues: 176
  loop : -2.10 (0.17), residues: 1024

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 ARG   0.007   0.001   ARG A 998 
 TYR   0.014   0.001   TYR A 999 
 PHE   0.014   0.001   PHE C 779 
 TRP   0.034   0.001   TRP A 994 
 HIS   0.009   0.002   HIS D 845 

Details of bonding type rmsd
  covalent geometry    : bond        0.00342 (24692)
  covalent geometry    : angle       0.50078 (33968)
  SS BOND              : bond        0.00672 (    8)
  SS BOND              : angle       1.70645 (   16)
  hydrogen bonds       : bond        0.04144 ( 1737)
  hydrogen bonds       : angle       4.24352 ( 5163)
Origin is already at (0, 0, 0), no shifts will be applied

===============================================================================
Job complete
usr+sys time: 6529.25 seconds
wall clock time: 112 minutes 18.70 seconds (6738.70 seconds total)