Starting phenix.real_space_refine
on Thu Dec 26 07:14:34 2024 by dcliebschner
===============================================================================

Processing files:
-------------------------------------------------------------------------------

  Found model, /net/cci-nas-00/data/ceres_data/9b6k_44262/12_2024/9b6k_44262.cif
  Found real_map, /net/cci-nas-00/data/ceres_data/9b6k_44262/12_2024/9b6k_44262.map

Processing PHIL parameters:
-------------------------------------------------------------------------------

  Adding command-line PHIL:
  -------------------------
    refinement.macro_cycles=10
    scattering_table=electron
    resolution=4.13
    write_initial_geo_file=False

Final processed PHIL parameters:
-------------------------------------------------------------------------------
  data_manager {
    real_map_files = "/net/cci-nas-00/data/ceres_data/9b6k_44262/12_2024/9b6k_44262.map"
    default_real_map = "/net/cci-nas-00/data/ceres_data/9b6k_44262/12_2024/9b6k_44262.map"
    model {
      file = "/net/cci-nas-00/data/ceres_data/9b6k_44262/12_2024/9b6k_44262.cif"
    }
    default_model = "/net/cci-nas-00/data/ceres_data/9b6k_44262/12_2024/9b6k_44262.cif"
  }
  resolution = 4.13
  write_initial_geo_file = False
  refinement {
    macro_cycles = 10
  }
  qi {
    qm_restraints {
      package {
        program = *test
      }
    }
  }


Starting job
===============================================================================
-------------------------------------------------------------------------------
Citation:
*********
Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams
PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography.
Acta Cryst. D74:531-544.

Validating inputs
Origin is already at (0, 0, 0), no shifts will be applied
-------------------------------------------------------------------------------
Processing inputs
*****************
Set random seed
  Set to: 0
Set model cs if undefined
Decide on map wrapping
  Map wrapping is set to: False
Normalize map: mean=0, sd=1
  Input map: mean=   0.006 sd=   0.038
Set stop_for_unknowns flag
  Set to: True
Assert model is a single copy model
Assert all atoms have isotropic ADPs
Construct map_model_manager
Extract box with map and model
Check model and map are aligned
Set scattering table
  Set to: electron
  Number of scattering types: 6
    Type Number    sf(0)   Gaussians
     Ca      4      9.91       5
     S      88      5.16       5
     C   15656      2.51       5
     N    4140      2.21       5
     O    4324      1.98       5
     H   19264      0.53       5
    sf(0) = scattering factor at diffraction angle 0.
Process input model

  Symmetric amino acids flipped. Time to flip 4 residue(s): 0.07s

  Monomer Library directory:
    "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5532/modules/chem_data/mon_lib"
  Total number of atoms: 43476
  Number of models: 1
  Model: ""
    Number of chains: 2
    Chain: "A"
      Number of atoms: 10868
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 919, 10868
          Classifications: {'peptide': 919}
          Link IDs: {'PTRANS': 22, 'TRANS': 896}
          Chain breaks: 10
          Unresolved non-hydrogen bonds: 1511
          Unresolved non-hydrogen angles: 1918
          Unresolved non-hydrogen dihedrals: 1235
          Unresolved non-hydrogen chiralities: 127
          Planarities with less than four sites: {'GLN:plan1': 22, 'HIS:plan': 12, 'TYR:plan': 10, 'ASN:plan1': 36, 'TRP:plan': 5, 'ASP:plan': 29, 'PHE:plan': 21, 'GLU:plan': 45, 'ARG:plan': 27}
          Unresolved non-hydrogen planarities: 897
    Chain: "A"
      Number of atoms: 1
      Number of conformers: 1
      Conformer: ""
        Number of residues, atoms: 1, 1
          Unusual residues: {' CA': 1}
          Classifications: {'undetermined': 1}
  Restraints were copied for chains:
    C, B, D
  Time building chain proxies: 35.86, per 1000 atoms: 0.82
  Number of scatterers: 43476
  At special positions: 0
  Unit cell: (154.44, 154.44, 152.28, 90, 90, 90)
  Space group: P 1 (No. 1)
  Number of sites at special positions: 0
  Number of scattering types: 6
    Type Number    sf(0)
     Ca      4     19.99
     S      88     16.00
     O    4324      8.00
     N    4140      7.00
     C   15656      6.00
     H   19264      1.00
    sf(0) = scattering factor at diffraction angle 0.

  Number of disulfides: simple=2, symmetry=0
    Simple disulfide: pdb=" SG  CYS A 303 " - pdb=" SG  CYS A 326 " distance=2.75
    Simple disulfide: pdb=" SG  CYS A 929 " - pdb=" SG  CYS A 940 " distance=2.03

  Automatic linking
    Parameters for automatic linking
      Linking & cutoffs
        Metal                : Auto  - 3.00
        Amino acid           : True  - 1.90
        Carbohydrate         : True  - 1.99
        Ligands              : True  - 1.99
        Small molecules      : False - 1.98
        Amino acid - RNA/DNA : False
      
  Number of custom bonds: simple=0, symmetry=0
  Time building additional restraints: 12.71
  Conformation dependent library (CDL) restraints added in 4.5 seconds
  

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
  Adding C-beta torsion restraints...
  Number of C-beta restraints generated:  7016

  Finding SS restraints...
    Secondary structure from input PDB file:
      172 helices and 4 sheets defined
      71.6% alpha, 3.2% beta
      0 base pairs and 0 stacking pairs defined.
    Time for finding SS restraints: 3.61
  Creating SS restraints...
    Processing helix  chain 'A' and resid 40 through 50
      removed outlier: 3.570A  pdb=" N   PHE A  49 " --> pdb=" O   ILE A  45 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 125 through 136
    Processing helix  chain 'A' and resid 161 through 176
    Processing helix  chain 'A' and resid 187 through 202
      removed outlier: 4.173A  pdb=" N   TYR A 191 " --> pdb=" O   GLY A 187 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 273 through 288
      removed outlier: 3.932A  pdb=" N   LEU A 277 " --> pdb=" O   VAL A 273 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 309 through 322
    Processing helix  chain 'A' and resid 335 through 343
    Processing helix  chain 'A' and resid 351 through 357
    Processing helix  chain 'A' and resid 362 through 369
    Processing helix  chain 'A' and resid 370 through 386
    Processing helix  chain 'A' and resid 402 through 420
      removed outlier: 3.567A  pdb=" N   ILE A 408 " --> pdb=" O   VAL A 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU A 420 " --> pdb=" O   PHE A 416 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 425 through 436
      removed outlier: 3.721A  pdb=" N   TRP A 436 " --> pdb=" O   LEU A 432 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 439 through 446
      removed outlier: 3.651A  pdb=" N   ASP A 444 " --> pdb=" O   ASP A 440 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 460 through 469
    Processing helix  chain 'A' and resid 473 through 481
      removed outlier: 3.572A  pdb=" N   PHE A 477 " --> pdb=" O   PHE A 473 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 483 through 488
    Processing helix  chain 'A' and resid 489 through 499
    Processing helix  chain 'A' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN A 508 " --> pdb=" O   LEU A 504 " (cutoff:3.500A)
      removed outlier: 4.064A  pdb=" N   SER A 515 " --> pdb=" O   ILE A 511 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 518 through 535
      removed outlier: 3.703A  pdb=" N   PHE A 535 " --> pdb=" O   PHE A 531 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA A 563 " --> pdb=" O   HIS A 559 " (cutoff:3.500A)
      removed outlier: 3.789A  pdb=" N   GLN A 571 " --> pdb=" O   TRP A 567 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 573 through 584
    Processing helix  chain 'A' and resid 586 through 602
    Processing helix  chain 'A' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY A 612 " --> pdb=" O   ILE A 608 " (cutoff:3.500A)
      removed outlier: 3.563A  pdb=" N   THR A 630 " --> pdb=" O   VAL A 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU A 631 " --> pdb=" O   GLU A 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS A 632 " --> pdb=" O   LEU A 628 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 636 through 645
      removed outlier: 3.770A  pdb=" N   VAL A 645 " --> pdb=" O   GLU A 641 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 655 through 662
    Processing helix  chain 'A' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE A 669 " --> pdb=" O   ASP A 665 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 671 through 684
    Processing helix  chain 'A' and resid 691 through 701
      removed outlier: 3.805A  pdb=" N   PHE A 700 " --> pdb=" O   ILE A 696 " (cutoff:3.500A)
      removed outlier: 3.571A  pdb=" N   ILE A 701 " --> pdb=" O   LEU A 697 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 725 through 732
      removed outlier: 3.650A  pdb=" N   PHE A 730 " --> pdb=" O   TYR A 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE A 731 " --> pdb=" O   TYR A 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR A 732 " --> pdb=" O   VAL A 728 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 733 through 758
    Processing helix  chain 'A' and resid 765 through 789
    Processing helix  chain 'A' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE A 794 " --> pdb=" O   GLY A 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR A 795 " --> pdb=" O   VAL A 791 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 796 through 818
      removed outlier: 4.055A  pdb=" N   VAL A 800 " --> pdb=" O   ASP A 796 " (cutoff:3.500A)
      removed outlier: 3.784A  pdb=" N   MET A 801 " --> pdb=" O   LEU A 797 " (cutoff:3.500A)
      removed outlier: 3.677A  pdb=" N   ASP A 802 " --> pdb=" O   TRP A 798 " (cutoff:3.500A)
      removed outlier: 3.530A  pdb=" N   ALA A 811 " --> pdb=" O   PHE A 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS A 818 " --> pdb=" O   VAL A 814 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER A 827 " --> pdb=" O   SER A 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY A 828 " --> pdb=" O   SER A 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE A 838 " --> pdb=" O   LEU A 834 " (cutoff:3.500A)
      removed outlier: 3.704A  pdb=" N   ILE A 844 " --> pdb=" O   THR A 840 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 854 through 889
      removed outlier: 4.057A  pdb=" N   ILE A 858 " --> pdb=" O   GLY A 854 " (cutoff:3.500A)
      removed outlier: 3.960A  pdb=" N   MET A 859 " --> pdb=" O   PRO A 855 " (cutoff:3.500A)
      removed outlier: 4.119A  pdb=" N   LEU A 860 " --> pdb=" O   LYS A 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN A 861 " --> pdb=" O   ILE A 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG A 862 " --> pdb=" O   ILE A 858 " (cutoff:3.500A)
      removed outlier: 4.853A  pdb=" N   ILE A 865 " --> pdb=" O   GLN A 861 " (cutoff:3.500A)
      removed outlier: 5.290A  pdb=" N   ASP A 866 " --> pdb=" O   ARG A 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL A 867 " --> pdb=" O   MET A 863 " (cutoff:3.500A)
      removed outlier: 3.513A  pdb=" N   GLY A 887 " --> pdb=" O   VAL A 883 " (cutoff:3.500A)
      removed outlier: 4.217A  pdb=" N   ILE A 888 " --> pdb=" O   ALA A 884 " (cutoff:3.500A)
      removed outlier: 4.071A  pdb=" N   LEU A 889 " --> pdb=" O   ARG A 885 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 895 through 913
      Proline residue:  A 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE A 912 " --> pdb=" O   TYR A 908 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 915 through 920
      removed outlier: 3.858A  pdb=" N   ASP A 918 " --> pdb=" O   VAL A 915 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 944 through 948
      removed outlier: 4.082A  pdb=" N   ASN A 947 " --> pdb=" O   ASP A 944 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 952 through 969
      removed outlier: 3.751A  pdb=" N   THR A 956 " --> pdb=" O   PRO A 952 " (cutoff:3.500A)
      Proline residue:  A 958  - end of helix
      removed outlier: 3.804A  pdb=" N   ILE A 969 " --> pdb=" O   LEU A 965 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 970 through 1008
      removed outlier: 3.536A  pdb=" N   VAL A 976 " --> pdb=" O   VAL A 972 " (cutoff:3.500A)
      removed outlier: 3.718A  pdb=" N   ALA A 977 " --> pdb=" O   ASN A 973 " (cutoff:3.500A)
      removed outlier: 3.798A  pdb=" N   VAL A 986 " --> pdb=" O   THR A 982 " (cutoff:3.500A)
      removed outlier: 4.678A  pdb=" N   GLU A 988 " --> pdb=" O   GLY A 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN A 989 " --> pdb=" O   ILE A 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP A 991 " --> pdb=" O   GLN A 987 " (cutoff:3.500A)
      removed outlier: 4.686A  pdb=" N   GLN A 992 " --> pdb=" O   GLU A 988 " (cutoff:3.500A)
      removed outlier: 3.614A  pdb=" N   PHE A1000 " --> pdb=" O   PHE A 996 " (cutoff:3.500A)
      removed outlier: 3.545A  pdb=" N   LEU A1001 " --> pdb=" O   GLN A 997 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE A1018 " --> pdb=" O   PRO A1014 " (cutoff:3.500A)
    Processing helix  chain 'A' and resid 1051 through 1073
    Processing helix  chain 'A' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS A1080 " --> pdb=" O   GLU A1076 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 41 through 50
      removed outlier: 3.570A  pdb=" N   PHE B  49 " --> pdb=" O   ILE B  45 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 125 through 136
    Processing helix  chain 'B' and resid 161 through 176
    Processing helix  chain 'B' and resid 187 through 202
      removed outlier: 4.173A  pdb=" N   TYR B 191 " --> pdb=" O   GLY B 187 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 273 through 288
      removed outlier: 3.933A  pdb=" N   LEU B 277 " --> pdb=" O   VAL B 273 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 309 through 322
    Processing helix  chain 'B' and resid 335 through 343
    Processing helix  chain 'B' and resid 351 through 357
    Processing helix  chain 'B' and resid 362 through 369
    Processing helix  chain 'B' and resid 370 through 386
    Processing helix  chain 'B' and resid 402 through 420
      removed outlier: 3.567A  pdb=" N   ILE B 408 " --> pdb=" O   VAL B 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU B 420 " --> pdb=" O   PHE B 416 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 425 through 436
      removed outlier: 3.720A  pdb=" N   TRP B 436 " --> pdb=" O   LEU B 432 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 439 through 446
      removed outlier: 3.650A  pdb=" N   ASP B 444 " --> pdb=" O   ASP B 440 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 460 through 469
    Processing helix  chain 'B' and resid 473 through 481
      removed outlier: 3.572A  pdb=" N   PHE B 477 " --> pdb=" O   PHE B 473 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 483 through 488
    Processing helix  chain 'B' and resid 489 through 499
    Processing helix  chain 'B' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN B 508 " --> pdb=" O   LEU B 504 " (cutoff:3.500A)
      removed outlier: 4.063A  pdb=" N   SER B 515 " --> pdb=" O   ILE B 511 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 518 through 535
      removed outlier: 3.702A  pdb=" N   PHE B 535 " --> pdb=" O   PHE B 531 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA B 563 " --> pdb=" O   HIS B 559 " (cutoff:3.500A)
      removed outlier: 3.790A  pdb=" N   GLN B 571 " --> pdb=" O   TRP B 567 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 573 through 584
    Processing helix  chain 'B' and resid 586 through 602
    Processing helix  chain 'B' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY B 612 " --> pdb=" O   ILE B 608 " (cutoff:3.500A)
      removed outlier: 3.563A  pdb=" N   THR B 630 " --> pdb=" O   VAL B 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU B 631 " --> pdb=" O   GLU B 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS B 632 " --> pdb=" O   LEU B 628 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 636 through 645
      removed outlier: 3.769A  pdb=" N   VAL B 645 " --> pdb=" O   GLU B 641 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 655 through 662
    Processing helix  chain 'B' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE B 669 " --> pdb=" O   ASP B 665 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 671 through 684
    Processing helix  chain 'B' and resid 691 through 701
      removed outlier: 3.806A  pdb=" N   PHE B 700 " --> pdb=" O   ILE B 696 " (cutoff:3.500A)
      removed outlier: 3.571A  pdb=" N   ILE B 701 " --> pdb=" O   LEU B 697 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 725 through 732
      removed outlier: 3.651A  pdb=" N   PHE B 730 " --> pdb=" O   TYR B 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE B 731 " --> pdb=" O   TYR B 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR B 732 " --> pdb=" O   VAL B 728 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 733 through 758
    Processing helix  chain 'B' and resid 765 through 789
    Processing helix  chain 'B' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE B 794 " --> pdb=" O   GLY B 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR B 795 " --> pdb=" O   VAL B 791 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 796 through 818
      removed outlier: 4.056A  pdb=" N   VAL B 800 " --> pdb=" O   ASP B 796 " (cutoff:3.500A)
      removed outlier: 3.783A  pdb=" N   MET B 801 " --> pdb=" O   LEU B 797 " (cutoff:3.500A)
      removed outlier: 3.678A  pdb=" N   ASP B 802 " --> pdb=" O   TRP B 798 " (cutoff:3.500A)
      removed outlier: 3.529A  pdb=" N   ALA B 811 " --> pdb=" O   PHE B 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS B 818 " --> pdb=" O   VAL B 814 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER B 827 " --> pdb=" O   SER B 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY B 828 " --> pdb=" O   SER B 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE B 838 " --> pdb=" O   LEU B 834 " (cutoff:3.500A)
      removed outlier: 3.705A  pdb=" N   ILE B 844 " --> pdb=" O   THR B 840 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 854 through 889
      removed outlier: 4.057A  pdb=" N   ILE B 858 " --> pdb=" O   GLY B 854 " (cutoff:3.500A)
      removed outlier: 3.959A  pdb=" N   MET B 859 " --> pdb=" O   PRO B 855 " (cutoff:3.500A)
      removed outlier: 4.118A  pdb=" N   LEU B 860 " --> pdb=" O   LYS B 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN B 861 " --> pdb=" O   ILE B 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG B 862 " --> pdb=" O   ILE B 858 " (cutoff:3.500A)
      removed outlier: 4.854A  pdb=" N   ILE B 865 " --> pdb=" O   GLN B 861 " (cutoff:3.500A)
      removed outlier: 5.290A  pdb=" N   ASP B 866 " --> pdb=" O   ARG B 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL B 867 " --> pdb=" O   MET B 863 " (cutoff:3.500A)
      removed outlier: 3.513A  pdb=" N   GLY B 887 " --> pdb=" O   VAL B 883 " (cutoff:3.500A)
      removed outlier: 4.216A  pdb=" N   ILE B 888 " --> pdb=" O   ALA B 884 " (cutoff:3.500A)
      removed outlier: 4.070A  pdb=" N   LEU B 889 " --> pdb=" O   ARG B 885 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 895 through 913
      Proline residue:  B 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE B 912 " --> pdb=" O   TYR B 908 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 915 through 920
      removed outlier: 3.859A  pdb=" N   ASP B 918 " --> pdb=" O   VAL B 915 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 944 through 948
      removed outlier: 4.082A  pdb=" N   ASN B 947 " --> pdb=" O   ASP B 944 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 952 through 969
      removed outlier: 3.751A  pdb=" N   THR B 956 " --> pdb=" O   PRO B 952 " (cutoff:3.500A)
      Proline residue:  B 958  - end of helix
      removed outlier: 3.804A  pdb=" N   ILE B 969 " --> pdb=" O   LEU B 965 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 970 through 1008
      removed outlier: 3.536A  pdb=" N   VAL B 976 " --> pdb=" O   VAL B 972 " (cutoff:3.500A)
      removed outlier: 3.718A  pdb=" N   ALA B 977 " --> pdb=" O   ASN B 973 " (cutoff:3.500A)
      removed outlier: 3.798A  pdb=" N   VAL B 986 " --> pdb=" O   THR B 982 " (cutoff:3.500A)
      removed outlier: 4.679A  pdb=" N   GLU B 988 " --> pdb=" O   GLY B 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN B 989 " --> pdb=" O   ILE B 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP B 991 " --> pdb=" O   GLN B 987 " (cutoff:3.500A)
      removed outlier: 4.686A  pdb=" N   GLN B 992 " --> pdb=" O   GLU B 988 " (cutoff:3.500A)
      removed outlier: 3.615A  pdb=" N   PHE B1000 " --> pdb=" O   PHE B 996 " (cutoff:3.500A)
      removed outlier: 3.545A  pdb=" N   LEU B1001 " --> pdb=" O   GLN B 997 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE B1018 " --> pdb=" O   PRO B1014 " (cutoff:3.500A)
    Processing helix  chain 'B' and resid 1051 through 1073
    Processing helix  chain 'B' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS B1080 " --> pdb=" O   GLU B1076 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 41 through 50
      removed outlier: 3.570A  pdb=" N   PHE C  49 " --> pdb=" O   ILE C  45 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 125 through 136
    Processing helix  chain 'C' and resid 161 through 176
    Processing helix  chain 'C' and resid 187 through 202
      removed outlier: 4.173A  pdb=" N   TYR C 191 " --> pdb=" O   GLY C 187 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 273 through 288
      removed outlier: 3.932A  pdb=" N   LEU C 277 " --> pdb=" O   VAL C 273 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 309 through 322
    Processing helix  chain 'C' and resid 335 through 343
    Processing helix  chain 'C' and resid 351 through 357
    Processing helix  chain 'C' and resid 362 through 369
    Processing helix  chain 'C' and resid 370 through 386
    Processing helix  chain 'C' and resid 402 through 420
      removed outlier: 3.567A  pdb=" N   ILE C 408 " --> pdb=" O   VAL C 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU C 420 " --> pdb=" O   PHE C 416 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 425 through 436
      removed outlier: 3.720A  pdb=" N   TRP C 436 " --> pdb=" O   LEU C 432 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 439 through 446
      removed outlier: 3.651A  pdb=" N   ASP C 444 " --> pdb=" O   ASP C 440 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 460 through 469
    Processing helix  chain 'C' and resid 473 through 481
      removed outlier: 3.572A  pdb=" N   PHE C 477 " --> pdb=" O   PHE C 473 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 483 through 488
    Processing helix  chain 'C' and resid 489 through 499
    Processing helix  chain 'C' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN C 508 " --> pdb=" O   LEU C 504 " (cutoff:3.500A)
      removed outlier: 4.063A  pdb=" N   SER C 515 " --> pdb=" O   ILE C 511 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 518 through 535
      removed outlier: 3.702A  pdb=" N   PHE C 535 " --> pdb=" O   PHE C 531 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA C 563 " --> pdb=" O   HIS C 559 " (cutoff:3.500A)
      removed outlier: 3.789A  pdb=" N   GLN C 571 " --> pdb=" O   TRP C 567 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 573 through 584
    Processing helix  chain 'C' and resid 586 through 602
    Processing helix  chain 'C' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY C 612 " --> pdb=" O   ILE C 608 " (cutoff:3.500A)
      removed outlier: 3.564A  pdb=" N   THR C 630 " --> pdb=" O   VAL C 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU C 631 " --> pdb=" O   GLU C 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS C 632 " --> pdb=" O   LEU C 628 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 636 through 645
      removed outlier: 3.770A  pdb=" N   VAL C 645 " --> pdb=" O   GLU C 641 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 655 through 662
    Processing helix  chain 'C' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE C 669 " --> pdb=" O   ASP C 665 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 671 through 684
    Processing helix  chain 'C' and resid 691 through 701
      removed outlier: 3.805A  pdb=" N   PHE C 700 " --> pdb=" O   ILE C 696 " (cutoff:3.500A)
      removed outlier: 3.570A  pdb=" N   ILE C 701 " --> pdb=" O   LEU C 697 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 725 through 732
      removed outlier: 3.651A  pdb=" N   PHE C 730 " --> pdb=" O   TYR C 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE C 731 " --> pdb=" O   TYR C 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR C 732 " --> pdb=" O   VAL C 728 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 733 through 758
    Processing helix  chain 'C' and resid 765 through 789
    Processing helix  chain 'C' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE C 794 " --> pdb=" O   GLY C 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR C 795 " --> pdb=" O   VAL C 791 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 796 through 818
      removed outlier: 4.056A  pdb=" N   VAL C 800 " --> pdb=" O   ASP C 796 " (cutoff:3.500A)
      removed outlier: 3.783A  pdb=" N   MET C 801 " --> pdb=" O   LEU C 797 " (cutoff:3.500A)
      removed outlier: 3.678A  pdb=" N   ASP C 802 " --> pdb=" O   TRP C 798 " (cutoff:3.500A)
      removed outlier: 3.530A  pdb=" N   ALA C 811 " --> pdb=" O   PHE C 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS C 818 " --> pdb=" O   VAL C 814 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER C 827 " --> pdb=" O   SER C 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY C 828 " --> pdb=" O   SER C 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE C 838 " --> pdb=" O   LEU C 834 " (cutoff:3.500A)
      removed outlier: 3.704A  pdb=" N   ILE C 844 " --> pdb=" O   THR C 840 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 854 through 889
      removed outlier: 4.056A  pdb=" N   ILE C 858 " --> pdb=" O   GLY C 854 " (cutoff:3.500A)
      removed outlier: 3.960A  pdb=" N   MET C 859 " --> pdb=" O   PRO C 855 " (cutoff:3.500A)
      removed outlier: 4.118A  pdb=" N   LEU C 860 " --> pdb=" O   LYS C 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN C 861 " --> pdb=" O   ILE C 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG C 862 " --> pdb=" O   ILE C 858 " (cutoff:3.500A)
      removed outlier: 4.854A  pdb=" N   ILE C 865 " --> pdb=" O   GLN C 861 " (cutoff:3.500A)
      removed outlier: 5.290A  pdb=" N   ASP C 866 " --> pdb=" O   ARG C 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL C 867 " --> pdb=" O   MET C 863 " (cutoff:3.500A)
      removed outlier: 3.512A  pdb=" N   GLY C 887 " --> pdb=" O   VAL C 883 " (cutoff:3.500A)
      removed outlier: 4.216A  pdb=" N   ILE C 888 " --> pdb=" O   ALA C 884 " (cutoff:3.500A)
      removed outlier: 4.070A  pdb=" N   LEU C 889 " --> pdb=" O   ARG C 885 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 895 through 913
      Proline residue:  C 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE C 912 " --> pdb=" O   TYR C 908 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 915 through 920
      removed outlier: 3.858A  pdb=" N   ASP C 918 " --> pdb=" O   VAL C 915 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 944 through 948
      removed outlier: 4.082A  pdb=" N   ASN C 947 " --> pdb=" O   ASP C 944 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 952 through 969
      removed outlier: 3.751A  pdb=" N   THR C 956 " --> pdb=" O   PRO C 952 " (cutoff:3.500A)
      Proline residue:  C 958  - end of helix
      removed outlier: 3.804A  pdb=" N   ILE C 969 " --> pdb=" O   LEU C 965 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 970 through 1008
      removed outlier: 3.535A  pdb=" N   VAL C 976 " --> pdb=" O   VAL C 972 " (cutoff:3.500A)
      removed outlier: 3.718A  pdb=" N   ALA C 977 " --> pdb=" O   ASN C 973 " (cutoff:3.500A)
      removed outlier: 3.798A  pdb=" N   VAL C 986 " --> pdb=" O   THR C 982 " (cutoff:3.500A)
      removed outlier: 4.678A  pdb=" N   GLU C 988 " --> pdb=" O   GLY C 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN C 989 " --> pdb=" O   ILE C 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP C 991 " --> pdb=" O   GLN C 987 " (cutoff:3.500A)
      removed outlier: 4.685A  pdb=" N   GLN C 992 " --> pdb=" O   GLU C 988 " (cutoff:3.500A)
      removed outlier: 3.614A  pdb=" N   PHE C1000 " --> pdb=" O   PHE C 996 " (cutoff:3.500A)
      removed outlier: 3.546A  pdb=" N   LEU C1001 " --> pdb=" O   GLN C 997 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE C1018 " --> pdb=" O   PRO C1014 " (cutoff:3.500A)
    Processing helix  chain 'C' and resid 1051 through 1073
    Processing helix  chain 'C' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS C1080 " --> pdb=" O   GLU C1076 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 41 through 50
      removed outlier: 3.570A  pdb=" N   PHE D  49 " --> pdb=" O   ILE D  45 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 125 through 136
    Processing helix  chain 'D' and resid 161 through 176
    Processing helix  chain 'D' and resid 187 through 202
      removed outlier: 4.172A  pdb=" N   TYR D 191 " --> pdb=" O   GLY D 187 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 273 through 288
      removed outlier: 3.933A  pdb=" N   LEU D 277 " --> pdb=" O   VAL D 273 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 309 through 322
    Processing helix  chain 'D' and resid 335 through 343
    Processing helix  chain 'D' and resid 351 through 357
    Processing helix  chain 'D' and resid 362 through 369
    Processing helix  chain 'D' and resid 370 through 386
    Processing helix  chain 'D' and resid 402 through 420
      removed outlier: 3.566A  pdb=" N   ILE D 408 " --> pdb=" O   VAL D 404 " (cutoff:3.500A)
      removed outlier: 3.640A  pdb=" N   GLU D 420 " --> pdb=" O   PHE D 416 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 425 through 436
      removed outlier: 3.721A  pdb=" N   TRP D 436 " --> pdb=" O   LEU D 432 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 439 through 446
      removed outlier: 3.650A  pdb=" N   ASP D 444 " --> pdb=" O   ASP D 440 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 460 through 469
    Processing helix  chain 'D' and resid 473 through 481
      removed outlier: 3.571A  pdb=" N   PHE D 477 " --> pdb=" O   PHE D 473 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 483 through 488
    Processing helix  chain 'D' and resid 489 through 499
    Processing helix  chain 'D' and resid 503 through 515
      removed outlier: 4.414A  pdb=" N   ASN D 508 " --> pdb=" O   LEU D 504 " (cutoff:3.500A)
      removed outlier: 4.064A  pdb=" N   SER D 515 " --> pdb=" O   ILE D 511 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 518 through 535
      removed outlier: 3.702A  pdb=" N   PHE D 535 " --> pdb=" O   PHE D 531 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 559 through 571
      removed outlier: 3.773A  pdb=" N   ALA D 563 " --> pdb=" O   HIS D 559 " (cutoff:3.500A)
      removed outlier: 3.790A  pdb=" N   GLN D 571 " --> pdb=" O   TRP D 567 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 573 through 584
    Processing helix  chain 'D' and resid 586 through 602
    Processing helix  chain 'D' and resid 607 through 636
      removed outlier: 3.886A  pdb=" N   GLY D 612 " --> pdb=" O   ILE D 608 " (cutoff:3.500A)
      removed outlier: 3.563A  pdb=" N   THR D 630 " --> pdb=" O   VAL D 626 " (cutoff:3.500A)
      removed outlier: 4.148A  pdb=" N   GLU D 631 " --> pdb=" O   GLU D 627 " (cutoff:3.500A)
      removed outlier: 3.709A  pdb=" N   CYS D 632 " --> pdb=" O   LEU D 628 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 636 through 645
      removed outlier: 3.770A  pdb=" N   VAL D 645 " --> pdb=" O   GLU D 641 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 655 through 662
    Processing helix  chain 'D' and resid 665 through 670
      removed outlier: 3.883A  pdb=" N   ILE D 669 " --> pdb=" O   ASP D 665 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 671 through 684
    Processing helix  chain 'D' and resid 691 through 701
      removed outlier: 3.805A  pdb=" N   PHE D 700 " --> pdb=" O   ILE D 696 " (cutoff:3.500A)
      removed outlier: 3.570A  pdb=" N   ILE D 701 " --> pdb=" O   LEU D 697 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 725 through 732
      removed outlier: 3.651A  pdb=" N   PHE D 730 " --> pdb=" O   TYR D 726 " (cutoff:3.500A)
      removed outlier: 4.357A  pdb=" N   PHE D 731 " --> pdb=" O   TYR D 727 " (cutoff:3.500A)
      removed outlier: 4.065A  pdb=" N   THR D 732 " --> pdb=" O   VAL D 728 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 733 through 758
    Processing helix  chain 'D' and resid 765 through 789
    Processing helix  chain 'D' and resid 789 through 796
      removed outlier: 3.828A  pdb=" N   PHE D 794 " --> pdb=" O   GLY D 790 " (cutoff:3.500A)
      removed outlier: 3.710A  pdb=" N   THR D 795 " --> pdb=" O   VAL D 791 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 796 through 818
      removed outlier: 4.056A  pdb=" N   VAL D 800 " --> pdb=" O   ASP D 796 " (cutoff:3.500A)
      removed outlier: 3.783A  pdb=" N   MET D 801 " --> pdb=" O   LEU D 797 " (cutoff:3.500A)
      removed outlier: 3.678A  pdb=" N   ASP D 802 " --> pdb=" O   TRP D 798 " (cutoff:3.500A)
      removed outlier: 3.530A  pdb=" N   ALA D 811 " --> pdb=" O   PHE D 807 " (cutoff:3.500A)
      removed outlier: 4.289A  pdb=" N   HIS D 818 " --> pdb=" O   VAL D 814 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 823 through 847
      removed outlier: 3.662A  pdb=" N   SER D 827 " --> pdb=" O   SER D 823 " (cutoff:3.500A)
      removed outlier: 3.893A  pdb=" N   GLY D 828 " --> pdb=" O   SER D 824 " (cutoff:3.500A)
      removed outlier: 3.613A  pdb=" N   ILE D 838 " --> pdb=" O   LEU D 834 " (cutoff:3.500A)
      removed outlier: 3.705A  pdb=" N   ILE D 844 " --> pdb=" O   THR D 840 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 854 through 889
      removed outlier: 4.057A  pdb=" N   ILE D 858 " --> pdb=" O   GLY D 854 " (cutoff:3.500A)
      removed outlier: 3.960A  pdb=" N   MET D 859 " --> pdb=" O   PRO D 855 " (cutoff:3.500A)
      removed outlier: 4.118A  pdb=" N   LEU D 860 " --> pdb=" O   LYS D 856 " (cutoff:3.500A)
      removed outlier: 3.980A  pdb=" N   GLN D 861 " --> pdb=" O   ILE D 857 " (cutoff:3.500A)
      removed outlier: 3.655A  pdb=" N   ARG D 862 " --> pdb=" O   ILE D 858 " (cutoff:3.500A)
      removed outlier: 4.854A  pdb=" N   ILE D 865 " --> pdb=" O   GLN D 861 " (cutoff:3.500A)
      removed outlier: 5.291A  pdb=" N   ASP D 866 " --> pdb=" O   ARG D 862 " (cutoff:3.500A)
      removed outlier: 3.662A  pdb=" N   VAL D 867 " --> pdb=" O   MET D 863 " (cutoff:3.500A)
      removed outlier: 3.514A  pdb=" N   GLY D 887 " --> pdb=" O   VAL D 883 " (cutoff:3.500A)
      removed outlier: 4.217A  pdb=" N   ILE D 888 " --> pdb=" O   ALA D 884 " (cutoff:3.500A)
      removed outlier: 4.070A  pdb=" N   LEU D 889 " --> pdb=" O   ARG D 885 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 895 through 913
      Proline residue:  D 907  - end of helix
      removed outlier: 3.752A  pdb=" N   PHE D 912 " --> pdb=" O   TYR D 908 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 915 through 920
      removed outlier: 3.858A  pdb=" N   ASP D 918 " --> pdb=" O   VAL D 915 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 944 through 948
      removed outlier: 4.083A  pdb=" N   ASN D 947 " --> pdb=" O   ASP D 944 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 952 through 968
      removed outlier: 3.751A  pdb=" N   THR D 956 " --> pdb=" O   PRO D 952 " (cutoff:3.500A)
      Proline residue:  D 958  - end of helix
    Processing helix  chain 'D' and resid 970 through 1008
      removed outlier: 3.536A  pdb=" N   VAL D 976 " --> pdb=" O   VAL D 972 " (cutoff:3.500A)
      removed outlier: 3.717A  pdb=" N   ALA D 977 " --> pdb=" O   ASN D 973 " (cutoff:3.500A)
      removed outlier: 3.799A  pdb=" N   VAL D 986 " --> pdb=" O   THR D 982 " (cutoff:3.500A)
      removed outlier: 4.679A  pdb=" N   GLU D 988 " --> pdb=" O   GLY D 984 " (cutoff:3.500A)
      removed outlier: 5.720A  pdb=" N   ASN D 989 " --> pdb=" O   ILE D 985 " (cutoff:3.500A)
      removed outlier: 4.099A  pdb=" N   ASP D 991 " --> pdb=" O   GLN D 987 " (cutoff:3.500A)
      removed outlier: 4.686A  pdb=" N   GLN D 992 " --> pdb=" O   GLU D 988 " (cutoff:3.500A)
      removed outlier: 3.615A  pdb=" N   PHE D1000 " --> pdb=" O   PHE D 996 " (cutoff:3.500A)
      removed outlier: 3.545A  pdb=" N   LEU D1001 " --> pdb=" O   GLN D 997 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 1012 through 1027
      removed outlier: 3.608A  pdb=" N   PHE D1018 " --> pdb=" O   PRO D1014 " (cutoff:3.500A)
    Processing helix  chain 'D' and resid 1051 through 1073
    Processing helix  chain 'D' and resid 1076 through 1104
      removed outlier: 4.100A  pdb=" N   HIS D1080 " --> pdb=" O   GLU D1076 " (cutoff:3.500A)
    Processing sheet with id=AA1, first strand: chain 'A' and resid 116 through 121
      removed outlier: 3.817A  pdb=" N   ASP A 264 " --> pdb=" O   LEU A 120 " (cutoff:3.500A)
      removed outlier: 6.379A  pdb=" N   ALA A 211 " --> pdb=" O   HIS A 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU A 261 " --> pdb=" O   ALA A 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY A 213 " --> pdb=" O   LEU A 261 " (cutoff:3.500A)
      removed outlier: 7.584A  pdb=" N   VAL A 263 " --> pdb=" O   GLY A 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE A 179 " --> pdb=" O   ILE A 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE A 214 " --> pdb=" O   ILE A 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR A 181 " --> pdb=" O   ILE A 214 " (cutoff:3.500A)
      removed outlier: 6.097A  pdb=" N   CYS A 303 " --> pdb=" O   VAL A 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL A 329 " --> pdb=" O   CYS A 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA A 305 " --> pdb=" O   VAL A 329 " (cutoff:3.500A)
    Processing sheet with id=AA2, first strand: chain 'B' and resid 116 through 121
      removed outlier: 3.817A  pdb=" N   ASP B 264 " --> pdb=" O   LEU B 120 " (cutoff:3.500A)
      removed outlier: 6.380A  pdb=" N   ALA B 211 " --> pdb=" O   HIS B 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU B 261 " --> pdb=" O   ALA B 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY B 213 " --> pdb=" O   LEU B 261 " (cutoff:3.500A)
      removed outlier: 7.583A  pdb=" N   VAL B 263 " --> pdb=" O   GLY B 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE B 179 " --> pdb=" O   ILE B 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE B 214 " --> pdb=" O   ILE B 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR B 181 " --> pdb=" O   ILE B 214 " (cutoff:3.500A)
      removed outlier: 6.097A  pdb=" N   CYS B 303 " --> pdb=" O   VAL B 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL B 329 " --> pdb=" O   CYS B 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA B 305 " --> pdb=" O   VAL B 329 " (cutoff:3.500A)
    Processing sheet with id=AA3, first strand: chain 'C' and resid 116 through 121
      removed outlier: 3.818A  pdb=" N   ASP C 264 " --> pdb=" O   LEU C 120 " (cutoff:3.500A)
      removed outlier: 6.379A  pdb=" N   ALA C 211 " --> pdb=" O   HIS C 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU C 261 " --> pdb=" O   ALA C 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY C 213 " --> pdb=" O   LEU C 261 " (cutoff:3.500A)
      removed outlier: 7.584A  pdb=" N   VAL C 263 " --> pdb=" O   GLY C 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE C 179 " --> pdb=" O   ILE C 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE C 214 " --> pdb=" O   ILE C 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR C 181 " --> pdb=" O   ILE C 214 " (cutoff:3.500A)
      removed outlier: 6.096A  pdb=" N   CYS C 303 " --> pdb=" O   VAL C 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL C 329 " --> pdb=" O   CYS C 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA C 305 " --> pdb=" O   VAL C 329 " (cutoff:3.500A)
    Processing sheet with id=AA4, first strand: chain 'D' and resid 116 through 121
      removed outlier: 3.817A  pdb=" N   ASP D 264 " --> pdb=" O   LEU D 120 " (cutoff:3.500A)
      removed outlier: 6.379A  pdb=" N   ALA D 211 " --> pdb=" O   HIS D 259 " (cutoff:3.500A)
      removed outlier: 7.789A  pdb=" N   LEU D 261 " --> pdb=" O   ALA D 211 " (cutoff:3.500A)
      removed outlier: 6.283A  pdb=" N   GLY D 213 " --> pdb=" O   LEU D 261 " (cutoff:3.500A)
      removed outlier: 7.584A  pdb=" N   VAL D 263 " --> pdb=" O   GLY D 213 " (cutoff:3.500A)
      removed outlier: 6.428A  pdb=" N   ILE D 179 " --> pdb=" O   ILE D 212 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ILE D 214 " --> pdb=" O   ILE D 179 " (cutoff:3.500A)
      removed outlier: 7.016A  pdb=" N   THR D 181 " --> pdb=" O   ILE D 214 " (cutoff:3.500A)
      removed outlier: 6.097A  pdb=" N   CYS D 303 " --> pdb=" O   VAL D 327 " (cutoff:3.500A)
      removed outlier: 7.913A  pdb=" N   VAL D 329 " --> pdb=" O   CYS D 303 " (cutoff:3.500A)
      removed outlier: 7.624A  pdb=" N   ALA D 305 " --> pdb=" O   VAL D 329 " (cutoff:3.500A)

    1737 hydrogen bonds defined for protein.
    5163 hydrogen bond angles defined for protein.
    Restraints generated for nucleic acids:
      0 hydrogen bonds
      0 hydrogen bond angles
      0 basepair planarities
      0 basepair parallelities
      0 stacking parallelities
  Total time for adding SS restraints: 18.86

  Time building geometry restraints manager: 14.64 seconds

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.

  Histogram of bond lengths:
        0.84 -     1.03: 19228
        1.03 -     1.23: 56
        1.23 -     1.42: 10516
        1.42 -     1.62: 14032
        1.62 -     1.81: 124
  Bond restraints: 43956
  Sorted by residual:
  bond pdb=" CA  ALA C 977 "
       pdb=" C   ALA C 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.489  0.035 1.27e-02 6.20e+03 7.44e+00
  bond pdb=" CA  ALA A 977 "
       pdb=" C   ALA A 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.489  0.035 1.27e-02 6.20e+03 7.44e+00
  bond pdb=" CA  ALA B 977 "
       pdb=" C   ALA B 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.490  0.034 1.27e-02 6.20e+03 7.16e+00
  bond pdb=" CA  ALA D 977 "
       pdb=" C   ALA D 977 "
    ideal  model  delta    sigma   weight residual
    1.524  1.490  0.034 1.27e-02 6.20e+03 7.16e+00
  bond pdb=" C   ALA A 977 "
       pdb=" O   ALA A 977 "
    ideal  model  delta    sigma   weight residual
    1.236  1.206  0.031 1.15e-02 7.56e+03 7.10e+00
  ... (remaining 43951 not shown)

  Histogram of bond angle deviations from ideal:
        0.00 -     1.06: 72594
        1.06 -     2.11: 5327
        2.11 -     3.17: 193
        3.17 -     4.23: 82
        4.23 -     5.29: 24
  Bond angle restraints: 78220
  Sorted by residual:
  angle pdb=" C   VAL B 976 "
        pdb=" CA  VAL B 976 "
        pdb=" CB  VAL B 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.55    3.67 1.38e+00 5.25e-01 7.09e+00
  angle pdb=" C   VAL D 976 "
        pdb=" CA  VAL D 976 "
        pdb=" CB  VAL D 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.55    3.67 1.38e+00 5.25e-01 7.07e+00
  angle pdb=" C   VAL C 976 "
        pdb=" CA  VAL C 976 "
        pdb=" CB  VAL C 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.56    3.66 1.38e+00 5.25e-01 7.02e+00
  angle pdb=" C   VAL A 976 "
        pdb=" CA  VAL A 976 "
        pdb=" CB  VAL A 976 "
      ideal   model   delta    sigma   weight residual
     112.22  108.57    3.65 1.38e+00 5.25e-01 6.99e+00
  angle pdb=" N   ALA A 650 "
        pdb=" CA  ALA A 650 "
        pdb=" CB  ALA A 650 "
      ideal   model   delta    sigma   weight residual
     114.27  110.00    4.27 1.64e+00 3.72e-01 6.79e+00
  ... (remaining 78215 not shown)

  Histogram of dihedral angle deviations from ideal:
        0.00 -    17.86: 20504
       17.86 -    35.72: 884
       35.72 -    53.58: 337
       53.58 -    71.43: 97
       71.43 -    89.29: 12
  Dihedral angle restraints: 21834
    sinusoidal: 9338
      harmonic: 12496
  Sorted by residual:
  dihedral pdb=" CA  ILE B 904 "
           pdb=" C   ILE B 904 "
           pdb=" N   TYR B 905 "
           pdb=" CA  TYR B 905 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.81  -18.19     0      5.00e+00 4.00e-02 1.32e+01
  dihedral pdb=" CA  ILE D 904 "
           pdb=" C   ILE D 904 "
           pdb=" N   TYR D 905 "
           pdb=" CA  TYR D 905 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.81  -18.19     0      5.00e+00 4.00e-02 1.32e+01
  dihedral pdb=" CA  ILE C 904 "
           pdb=" C   ILE C 904 "
           pdb=" N   TYR C 905 "
           pdb=" CA  TYR C 905 "
      ideal   model   delta  harmonic     sigma   weight residual
    -180.00 -161.81  -18.19     0      5.00e+00 4.00e-02 1.32e+01
  ... (remaining 21831 not shown)

  Histogram of chiral volume deviations from ideal:
       0.000 -    0.042: 3446
       0.042 -    0.085: 552
       0.085 -    0.127: 158
       0.127 -    0.170: 16
       0.170 -    0.212: 4
  Chirality restraints: 4176
  Sorted by residual:
  chirality pdb=" CA  LEU C 975 "
            pdb=" N   LEU C 975 "
            pdb=" C   LEU C 975 "
            pdb=" CB  LEU C 975 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.30    0.21 2.00e-01 2.50e+01 1.13e+00
  chirality pdb=" CA  LEU D 975 "
            pdb=" N   LEU D 975 "
            pdb=" C   LEU D 975 "
            pdb=" CB  LEU D 975 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.30    0.21 2.00e-01 2.50e+01 1.12e+00
  chirality pdb=" CA  LEU B 975 "
            pdb=" N   LEU B 975 "
            pdb=" C   LEU B 975 "
            pdb=" CB  LEU B 975 "
    both_signs  ideal   model   delta    sigma   weight residual
      False      2.51    2.30    0.21 2.00e-01 2.50e+01 1.11e+00
  ... (remaining 4173 not shown)

  Planarity restraints: 7896
  Sorted by residual:
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" C   GLU C 906 "    0.026 5.00e-02 4.00e+02   3.89e-02 2.42e+00
        pdb=" N   PRO C 907 "   -0.067 5.00e-02 4.00e+02
        pdb=" CA  PRO C 907 "    0.019 5.00e-02 4.00e+02
        pdb=" CD  PRO C 907 "    0.022 5.00e-02 4.00e+02
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" C   GLU D 906 "   -0.026 5.00e-02 4.00e+02   3.88e-02 2.41e+00
        pdb=" N   PRO D 907 "    0.067 5.00e-02 4.00e+02
        pdb=" CA  PRO D 907 "   -0.019 5.00e-02 4.00e+02
        pdb=" CD  PRO D 907 "   -0.022 5.00e-02 4.00e+02
                                 delta    sigma   weight rms_deltas residual
  plane pdb=" C   GLU A 906 "   -0.026 5.00e-02 4.00e+02   3.88e-02 2.40e+00
        pdb=" N   PRO A 907 "    0.067 5.00e-02 4.00e+02
        pdb=" CA  PRO A 907 "   -0.019 5.00e-02 4.00e+02
        pdb=" CD  PRO A 907 "   -0.022 5.00e-02 4.00e+02
  ... (remaining 7893 not shown)

  Histogram of nonbonded interaction distances:
        1.51 -     2.13: 1111
        2.13 -     2.75: 69901
        2.75 -     3.37: 114326
        3.37 -     3.98: 126966
        3.98 -     4.60: 199997
  Nonbonded interactions: 512301
  Sorted by model distance:
  nonbonded pdb=" O   LEU C 749 "
            pdb=" HH  TYR C 836 "
     model   vdw
     1.514 2.450
  nonbonded pdb=" O   LEU D 749 "
            pdb=" HH  TYR D 836 "
     model   vdw
     1.514 2.450
  nonbonded pdb=" O   LEU A 749 "
            pdb=" HH  TYR A 836 "
     model   vdw
     1.515 2.450
  nonbonded pdb=" O   LEU B 749 "
            pdb=" HH  TYR B 836 "
     model   vdw
     1.515 2.450
  nonbonded pdb=" O   GLY A 309 "
            pdb=" HG1 THR A 312 "
     model   vdw
     1.614 2.450
  ... (remaining 512296 not shown)

  NOTE: a complete listing of the restraints can be obtained by requesting
        output of .geo file.
Find NCS groups from input model
Time spend for trying shortcut: 0.00
Found NCS groups:
ncs_group {
  reference = chain 'A'
  selection = chain 'B'
  selection = chain 'C'
  selection = chain 'D'
}

Set up NCS constraints
  No NCS constraints will be used in refinement.
Set refine NCS operators
Adjust number of macro_cycles
  Number of macro_cycles: 10
Reset NCS operators
Extract rigid body selections
Check and reset occupancies
  Occupancies: min=1.00 max=1.00 mean=1.00
Load rotamer database and sin/cos tables
Set ADP refinement strategy
  ADPs will be refined as group one per residue
Make a string to write initial .geo file
Internal consistency checks
Time:
  Set random seed:                         0.000
  Set model cs if undefined:               0.000
  Decide on map wrapping:                  0.010
  Normalize map: mean=0, sd=1:             1.260
  Set stop_for_unknowns flag:              0.000
  Assert model is a single copy model:     0.000
  Assert all atoms have isotropic ADPs:    0.010
  Construct map_model_manager:             0.930
  Extract box with map and model:          1.710
  Check model and map are aligned:         0.310
  Set scattering table:                    0.410
  Process input model:                     107.810
  Find NCS groups from input model:        1.430
  Set up NCS constraints:                  0.130
  Set refine NCS operators:                0.000
  Adjust number of macro_cycles:           0.000
  Reset NCS operators:                     0.000
  Extract rigid body selections:           0.000
  Check and reset occupancies:             0.010
  Load rotamer database and sin/cos tables:2.990
  Set ADP refinement strategy:             0.000
  Make a string to write initial .geo file:0.000
  Internal consistency checks:             0.000
  Total:  117.010
-------------------------------------------------------------------------------
Set refinement monitor
**********************
-------------------------------------------------------------------------------
Setup refinement engine
***********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7013
moved from start:          0.0000

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.002   0.035  24692  Z= 0.165
  Angle     :  0.461   5.286  33968  Z= 0.268
  Chirality :  0.036   0.212   4176
  Planarity :  0.003   0.039   4356
  Dihedral  : 10.708  85.622   7116
  Min Nonbonded Distance : 1.872

Molprobity Statistics.
  All-atom Clashscore : 8.46
  Ramachandran Plot:
    Outliers :  0.00 %
    Allowed  :  4.12 %
    Favored  : 95.88 %
  Rotamer:
    Outliers :  0.96 %
    Allowed  : 11.51 %
    Favored  : 87.53 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.67 (0.15), residues: 3588
  helix:  2.39 (0.11), residues: 2344
  sheet:  0.20 (0.48), residues: 156
  loop : -1.76 (0.17), residues: 1088

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.007   0.001   TRP D 877 
 HIS   0.002   0.001   HIS A 845 
 PHE   0.011   0.001   PHE B 735 
 TYR   0.012   0.001   TYR A 826 
 ARG   0.005   0.000   ARG B 624 

*********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  538 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 16
    poor density    : 522
  time to evaluate  : 3.651 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7745 (tpp) cc_final: 0.7459 (tpt)
REVERT: A  781 ASP cc_start: 0.7809 (t0) cc_final: 0.7602 (m-30)
REVERT: A  843 LEU cc_start: 0.8506 (tp) cc_final: 0.8303 (tp)
REVERT: A  850 SER cc_start: 0.8003 (t) cc_final: 0.7556 (p)
REVERT: A  859 MET cc_start: 0.8651 (ppp) cc_final: 0.8436 (ppp)
REVERT: A  911 MET cc_start: 0.7586 (pp-130) cc_final: 0.7309 (tmm)
REVERT: A  979 PHE cc_start: 0.8840 (OUTLIER) cc_final: 0.8383 (m-80)
REVERT: B  781 ASP cc_start: 0.7829 (t0) cc_final: 0.7624 (m-30)
REVERT: B  843 LEU cc_start: 0.8525 (tp) cc_final: 0.8305 (tp)
REVERT: B  850 SER cc_start: 0.8012 (t) cc_final: 0.7560 (p)
REVERT: B  968 ASN cc_start: 0.8331 (t0) cc_final: 0.8066 (t0)
REVERT: B  979 PHE cc_start: 0.8813 (OUTLIER) cc_final: 0.8481 (m-80)
REVERT: C  781 ASP cc_start: 0.7830 (t0) cc_final: 0.7627 (m-30)
REVERT: C  843 LEU cc_start: 0.8520 (tp) cc_final: 0.8307 (tp)
REVERT: C  850 SER cc_start: 0.8008 (t) cc_final: 0.7560 (p)
REVERT: C  968 ASN cc_start: 0.8329 (t0) cc_final: 0.8056 (t0)
REVERT: C  979 PHE cc_start: 0.8811 (OUTLIER) cc_final: 0.8476 (m-80)
REVERT: D  781 ASP cc_start: 0.7829 (t0) cc_final: 0.7624 (m-30)
REVERT: D  843 LEU cc_start: 0.8519 (tp) cc_final: 0.8298 (tp)
REVERT: D  850 SER cc_start: 0.8005 (t) cc_final: 0.7555 (p)
REVERT: D  968 ASN cc_start: 0.8329 (t0) cc_final: 0.8044 (t0)
REVERT: D  979 PHE cc_start: 0.8804 (OUTLIER) cc_final: 0.8476 (m-80)
  outliers start: 16
  outliers final: 12
  residues processed: 533
  average time/residue: 0.6155
  time to fit residues: 542.8407
Evaluate side-chains
  380 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 16
    poor density    : 364
  time to evaluate  : 3.824 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=5.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 307 optimal weight:    7.9990
   chunk 275 optimal weight:   50.0000
   chunk 153 optimal weight:    9.9990
   chunk 94 optimal weight:   20.0000
   chunk 186 optimal weight:    9.9990
   chunk 147 optimal weight:    0.7980
   chunk 285 optimal weight:   20.0000
   chunk 110 optimal weight:    1.9990
   chunk 173 optimal weight:    0.9980
   chunk 212 optimal weight:    5.9990
   chunk 330 optimal weight:    0.2980
   overall best weight:    2.0184

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 886 GLN
A 968 ASN
B 886 GLN
C 886 GLN
D 886 GLN

Total number of N/Q/H flips: 5

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7010
moved from start:          0.2748

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.079  24692  Z= 0.212
  Angle     :  0.522   5.441  33968  Z= 0.294
  Chirality :  0.037   0.146   4176
  Planarity :  0.004   0.057   4356
  Dihedral  :  3.698  17.470   3792
  Min Nonbonded Distance : 2.219

Molprobity Statistics.
  All-atom Clashscore : 9.08
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  3.71 %
    Favored  : 96.18 %
  Rotamer:
    Outliers :  0.06 %
    Allowed  :  1.44 %
    Favored  : 98.50 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.72 (0.14), residues: 3588
  helix:  2.33 (0.11), residues: 2376
  sheet:  0.58 (0.45), residues: 176
  loop : -1.73 (0.17), residues: 1036

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.007   0.001   TRP A 453 
 HIS   0.011   0.002   HIS D 761 
 PHE   0.030   0.001   PHE A 979 
 TYR   0.018   0.001   TYR D 836 
 ARG   0.005   0.001   ARG A 829 

*********************** REFINEMENT MACRO_CYCLE 2 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  451 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 1
    poor density    : 450
  time to evaluate  : 3.656 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  756 LEU cc_start: 0.8797 (tp) cc_final: 0.8531 (tp)
REVERT: A  801 MET cc_start: 0.8109 (ptm) cc_final: 0.7807 (ppp)
REVERT: A  836 TYR cc_start: 0.7191 (t80) cc_final: 0.6684 (m-80)
REVERT: A  859 MET cc_start: 0.8717 (ppp) cc_final: 0.8427 (ppp)
REVERT: A  961 CYS cc_start: 0.8577 (m) cc_final: 0.8178 (t)
REVERT: B  756 LEU cc_start: 0.8815 (tp) cc_final: 0.8548 (tp)
REVERT: B  801 MET cc_start: 0.8119 (ptm) cc_final: 0.7871 (ppp)
REVERT: B  836 TYR cc_start: 0.7224 (t80) cc_final: 0.6759 (m-80)
REVERT: C  756 LEU cc_start: 0.8817 (tp) cc_final: 0.8553 (tp)
REVERT: C  801 MET cc_start: 0.8119 (ptm) cc_final: 0.7873 (ppp)
REVERT: C  836 TYR cc_start: 0.7222 (t80) cc_final: 0.6754 (m-80)
REVERT: D  756 LEU cc_start: 0.8833 (tp) cc_final: 0.8572 (tp)
REVERT: D  801 MET cc_start: 0.8117 (ptm) cc_final: 0.7871 (ppp)
REVERT: D  836 TYR cc_start: 0.7211 (t80) cc_final: 0.6759 (m-80)
  outliers start: 1
  outliers final: 1
  residues processed: 451
  average time/residue: 0.6138
  time to fit residues: 456.7582
Evaluate side-chains
  336 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 1
    poor density    : 335
  time to evaluate  : 3.912 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=4.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 183 optimal weight:   10.0000
   chunk 102 optimal weight:   40.0000
   chunk 275 optimal weight:   50.0000
   chunk 225 optimal weight:    9.9990
   chunk 91 optimal weight:   50.0000
   chunk 331 optimal weight:    4.9990
   chunk 357 optimal weight:    9.9990
   chunk 294 optimal weight:   10.0000
   chunk 328 optimal weight:    0.8980
   chunk 112 optimal weight:    9.9990
   chunk 265 optimal weight:    4.9990
   overall best weight:    6.1788

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 914 GLN
B 914 GLN
C 914 GLN
D 914 GLN

Total number of N/Q/H flips: 4

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7170
moved from start:          0.3601

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.006   0.060  24692  Z= 0.371
  Angle     :  0.593   5.519  33968  Z= 0.349
  Chirality :  0.037   0.149   4176
  Planarity :  0.004   0.048   4356
  Dihedral  :  4.116  18.815   3792
  Min Nonbonded Distance : 2.113

Molprobity Statistics.
  All-atom Clashscore : 10.48
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.13 %
    Favored  : 94.76 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  3.72 %
    Favored  : 96.28 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  0.79 (0.14), residues: 3588
  helix:  1.60 (0.10), residues: 2376
  sheet:  0.08 (0.41), residues: 176
  loop : -2.02 (0.17), residues: 1036

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.035   0.002   TRP C 994 
 HIS   0.008   0.003   HIS A 667 
 PHE   0.017   0.002   PHE A 979 
 TYR   0.017   0.002   TYR D 999 
 ARG   0.005   0.001   ARG D 998 

*********************** REFINEMENT MACRO_CYCLE 3 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  369 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 369
  time to evaluate  : 3.767 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  788 MET cc_start: 0.8980 (mmm) cc_final: 0.8737 (mtt)
REVERT: A  801 MET cc_start: 0.8275 (ptm) cc_final: 0.7966 (ppp)
REVERT: A  850 SER cc_start: 0.8087 (t) cc_final: 0.7574 (p)
REVERT: A  859 MET cc_start: 0.8939 (ppp) cc_final: 0.8606 (ppp)
REVERT: B  801 MET cc_start: 0.8296 (ptm) cc_final: 0.7970 (ppp)
REVERT: C  801 MET cc_start: 0.8278 (ptm) cc_final: 0.7982 (ppp)
REVERT: D  801 MET cc_start: 0.8295 (ptm) cc_final: 0.7972 (ppp)
  outliers start: 0
  outliers final: 0
  residues processed: 369
  average time/residue: 0.5880
  time to fit residues: 368.2474
Evaluate side-chains
  322 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 322
  time to evaluate  : 3.764 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=4.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 327 optimal weight:    6.9990
   chunk 248 optimal weight:    1.9990
   chunk 171 optimal weight:    5.9990
   chunk 36 optimal weight:    9.9990
   chunk 158 optimal weight:    6.9990
   chunk 222 optimal weight:    9.9990
   chunk 332 optimal weight:    8.9990
   chunk 351 optimal weight:    7.9990
   chunk 173 optimal weight:    1.9990
   chunk 314 optimal weight:    4.9990
   chunk 94 optimal weight:    9.9990
   overall best weight:    4.3990

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

No N/Q/H corrections needed this macrocycle
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7153
moved from start:          0.4025

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.004   0.038  24692  Z= 0.266
  Angle     :  0.533   5.707  33968  Z= 0.313
  Chirality :  0.036   0.141   4176
  Planarity :  0.004   0.047   4356
  Dihedral  :  4.025  17.958   3792
  Min Nonbonded Distance : 2.164

Molprobity Statistics.
  All-atom Clashscore : 9.33
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.16 %
    Favored  : 94.73 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  1.68 %
    Favored  : 98.32 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  0.82 (0.14), residues: 3588
  helix:  1.64 (0.10), residues: 2384
  sheet: -0.08 (0.40), residues: 176
  loop : -2.03 (0.17), residues: 1028

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.013   0.001   TRP A 994 
 HIS   0.004   0.002   HIS B 845 
 PHE   0.017   0.002   PHE B 874 
 TYR   0.021   0.002   TYR A 793 
 ARG   0.004   0.001   ARG D 624 

*********************** REFINEMENT MACRO_CYCLE 4 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  364 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 364
  time to evaluate  : 4.080 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7537 (tpp) cc_final: 0.7280 (tpp)
REVERT: A  859 MET cc_start: 0.8917 (ppp) cc_final: 0.8583 (ppp)
  outliers start: 0
  outliers final: 0
  residues processed: 364
  average time/residue: 0.6049
  time to fit residues: 375.8426
Evaluate side-chains
  304 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 304
  time to evaluate  : 3.982 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=3.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 293 optimal weight:    2.9990
   chunk 199 optimal weight:    0.9990
   chunk 5 optimal weight:    9.9990
   chunk 261 optimal weight:    0.4980
   chunk 145 optimal weight:    6.9990
   chunk 300 optimal weight:    6.9990
   chunk 243 optimal weight:   10.0000
   chunk 0 optimal weight:   50.0000
   chunk 179 optimal weight:    8.9990
   chunk 315 optimal weight:    4.9990
   chunk 88 optimal weight:   10.0000
   overall best weight:    3.2988

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

No N/Q/H corrections needed this macrocycle
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7151
moved from start:          0.4187

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.033  24692  Z= 0.216
  Angle     :  0.500   5.877  33968  Z= 0.289
  Chirality :  0.036   0.138   4176
  Planarity :  0.004   0.046   4356
  Dihedral  :  3.931  17.089   3792
  Min Nonbonded Distance : 2.210

Molprobity Statistics.
  All-atom Clashscore : 8.60
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.63 %
    Favored  : 94.26 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  2.22 %
    Favored  : 97.78 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.07 (0.14), residues: 3588
  helix:  1.87 (0.11), residues: 2388
  sheet: -0.14 (0.38), residues: 176
  loop : -2.04 (0.17), residues: 1024

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.018   0.001   TRP A 994 
 HIS   0.004   0.001   HIS A 667 
 PHE   0.015   0.002   PHE D1082 
 TYR   0.015   0.001   TYR C 999 
 ARG   0.005   0.001   ARG B 998 

*********************** REFINEMENT MACRO_CYCLE 5 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  346 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 346
  time to evaluate  : 3.561 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  788 MET cc_start: 0.8946 (mmm) cc_final: 0.8717 (mtt)
REVERT: A  859 MET cc_start: 0.8916 (ppp) cc_final: 0.8551 (ppp)
REVERT: A  878 MET cc_start: 0.7768 (ttm) cc_final: 0.7434 (tmm)
REVERT: B  878 MET cc_start: 0.7723 (ttm) cc_final: 0.7373 (tmm)
REVERT: C  878 MET cc_start: 0.7710 (ttm) cc_final: 0.7374 (tmm)
REVERT: D  878 MET cc_start: 0.7702 (ttm) cc_final: 0.7345 (tmm)
  outliers start: 0
  outliers final: 0
  residues processed: 346
  average time/residue: 0.5882
  time to fit residues: 345.2338
Evaluate side-chains
  310 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 310
  time to evaluate  : 3.867 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=3.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 118 optimal weight:    5.9990
   chunk 316 optimal weight:    7.9990
   chunk 69 optimal weight:    0.8980
   chunk 206 optimal weight:    3.9990
   chunk 86 optimal weight:    8.9990
   chunk 352 optimal weight:    5.9990
   chunk 292 optimal weight:    0.8980
   chunk 163 optimal weight:    5.9990
   chunk 29 optimal weight:   10.0000
   chunk 116 optimal weight:   20.0000
   chunk 184 optimal weight:   50.0000
   overall best weight:    3.5586

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 655 ASN
A 968 ASN

Total number of N/Q/H flips: 2

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7158
moved from start:          0.4442

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.035  24692  Z= 0.228
  Angle     :  0.500   5.825  33968  Z= 0.288
  Chirality :  0.035   0.138   4176
  Planarity :  0.003   0.047   4356
  Dihedral  :  3.946  18.637   3792
  Min Nonbonded Distance : 2.192

Molprobity Statistics.
  All-atom Clashscore : 9.17
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.74 %
    Favored  : 94.15 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  1.02 %
    Favored  : 98.98 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.05 (0.14), residues: 3588
  helix:  1.86 (0.11), residues: 2392
  sheet: -0.19 (0.38), residues: 176
  loop : -2.07 (0.17), residues: 1020

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.012   0.001   TRP C 994 
 HIS   0.004   0.001   HIS C 667 
 PHE   0.012   0.001   PHE D 832 
 TYR   0.014   0.001   TYR B 999 
 ARG   0.005   0.001   ARG A 998 

*********************** REFINEMENT MACRO_CYCLE 6 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  361 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 361
  time to evaluate  : 3.642 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7543 (tpp) cc_final: 0.7269 (tpp)
REVERT: A  788 MET cc_start: 0.8971 (mmm) cc_final: 0.8731 (mtt)
REVERT: A  859 MET cc_start: 0.8920 (ppp) cc_final: 0.8566 (ppp)
REVERT: B  878 MET cc_start: 0.7773 (ttm) cc_final: 0.7423 (tmm)
  outliers start: 0
  outliers final: 0
  residues processed: 361
  average time/residue: 0.5969
  time to fit residues: 362.7803
Evaluate side-chains
  306 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 306
  time to evaluate  : 3.829 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=2.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 339 optimal weight:   10.0000
   chunk 39 optimal weight:    5.9990
   chunk 200 optimal weight:    9.9990
   chunk 257 optimal weight:    1.9990
   chunk 199 optimal weight:    9.9990
   chunk 296 optimal weight:    0.9980
   chunk 196 optimal weight:    0.9990
   chunk 350 optimal weight:    4.9990
   chunk 219 optimal weight:    4.9990
   chunk 213 optimal weight:    9.9990
   chunk 161 optimal weight:    0.9980
   overall best weight:    1.9986

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** A 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** B 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** C 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 0

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7134
moved from start:          0.4546

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.028  24692  Z= 0.169
  Angle     :  0.485   7.208  33968  Z= 0.277
  Chirality :  0.036   0.135   4176
  Planarity :  0.003   0.043   4356
  Dihedral  :  3.822  17.278   3792
  Min Nonbonded Distance : 2.222

Molprobity Statistics.
  All-atom Clashscore : 8.46
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.46 %
    Favored  : 94.43 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  1.44 %
    Favored  : 98.56 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.34 (0.14), residues: 3588
  helix:  2.10 (0.11), residues: 2388
  sheet: -0.13 (0.38), residues: 176
  loop : -2.00 (0.17), residues: 1024

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.015   0.001   TRP A 798 
 HIS   0.007   0.001   HIS C 845 
 PHE   0.024   0.001   PHE B 779 
 TYR   0.014   0.001   TYR A 999 
 ARG   0.003   0.001   ARG B 998 

*********************** REFINEMENT MACRO_CYCLE 7 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  350 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 350
  time to evaluate  : 4.214 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7505 (tpp) cc_final: 0.7222 (tpp)
REVERT: A  778 LEU cc_start: 0.8723 (tt) cc_final: 0.8263 (mm)
REVERT: A  788 MET cc_start: 0.8955 (mmm) cc_final: 0.8729 (mtt)
REVERT: B  878 MET cc_start: 0.7758 (ttm) cc_final: 0.7261 (tmm)
  outliers start: 0
  outliers final: 0
  residues processed: 350
  average time/residue: 0.5944
  time to fit residues: 355.7701
Evaluate side-chains
  304 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 304
  time to evaluate  : 4.253 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=2.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 217 optimal weight:   10.0000
   chunk 140 optimal weight:    6.9990
   chunk 209 optimal weight:    2.9990
   chunk 105 optimal weight:   10.0000
   chunk 68 optimal weight:    0.4980
   chunk 67 optimal weight:    1.9990
   chunk 223 optimal weight:    5.9990
   chunk 239 optimal weight:    4.9990
   chunk 173 optimal weight:    3.9990
   chunk 32 optimal weight:    9.9990
   chunk 275 optimal weight:    8.9990
   overall best weight:    2.8988

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
** A 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
B 655 ASN
** B 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
C 655 ASN
** C 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**
D 655 ASN
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 3

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7148
moved from start:          0.4706

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.034  24692  Z= 0.198
  Angle     :  0.495  10.632  33968  Z= 0.278
  Chirality :  0.035   0.136   4176
  Planarity :  0.003   0.044   4356
  Dihedral  :  3.843  18.136   3792
  Min Nonbonded Distance : 2.214

Molprobity Statistics.
  All-atom Clashscore : 8.78
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  5.63 %
    Favored  : 94.26 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.24 %
    Favored  : 99.76 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.37 (0.14), residues: 3588
  helix:  2.13 (0.11), residues: 2388
  sheet: -0.11 (0.38), residues: 176
  loop : -1.99 (0.17), residues: 1024

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.008   0.001   TRP D 994 
 HIS   0.009   0.002   HIS B 845 
 PHE   0.011   0.001   PHE C 809 
 TYR   0.014   0.001   TYR B 999 
 ARG   0.005   0.001   ARG B 998 

*********************** REFINEMENT MACRO_CYCLE 8 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  351 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 351
  time to evaluate  : 4.733 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7548 (tpp) cc_final: 0.7264 (tpp)
REVERT: A  788 MET cc_start: 0.8961 (mmm) cc_final: 0.8709 (mtt)
  outliers start: 0
  outliers final: 0
  residues processed: 351
  average time/residue: 0.6051
  time to fit residues: 362.2275
Evaluate side-chains
  310 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 310
  time to evaluate  : 3.899 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.50
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 319 optimal weight:    8.9990
   chunk 336 optimal weight:    0.0970
   chunk 306 optimal weight:    4.9990
   chunk 326 optimal weight:    9.9990
   chunk 196 optimal weight:    9.9990
   chunk 142 optimal weight:    4.9990
   chunk 256 optimal weight:    0.5980
   chunk 100 optimal weight:    5.9990
   chunk 295 optimal weight:   30.0000
   chunk 309 optimal weight:    8.9990
   chunk 325 optimal weight:    5.9990
   overall best weight:    3.3384

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
B 792 ASN
C 792 ASN
D 792 ASN

Total number of N/Q/H flips: 3

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7172
moved from start:          0.4829

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.025  24692  Z= 0.209
  Angle     :  0.494   7.874  33968  Z= 0.281
  Chirality :  0.035   0.137   4176
  Planarity :  0.003   0.043   4356
  Dihedral  :  3.849  17.674   3792
  Min Nonbonded Distance : 2.191

Molprobity Statistics.
  All-atom Clashscore : 8.76
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  6.08 %
    Favored  : 93.81 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.96 %
    Favored  : 99.04 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.32 (0.14), residues: 3588
  helix:  2.09 (0.11), residues: 2388
  sheet: -0.14 (0.38), residues: 176
  loop : -2.02 (0.17), residues: 1024

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.009   0.001   TRP A 898 
 HIS   0.008   0.001   HIS A 845 
 PHE   0.015   0.001   PHE A 869 
 TYR   0.015   0.001   TYR A 999 
 ARG   0.005   0.001   ARG A 998 

*********************** REFINEMENT MACRO_CYCLE 9 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  339 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 339
  time to evaluate  : 4.081 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7565 (tpp) cc_final: 0.7276 (tpp)
REVERT: A  788 MET cc_start: 0.8976 (mmm) cc_final: 0.8708 (mtt)
REVERT: B  758 MET cc_start: 0.7638 (tpp) cc_final: 0.7370 (tpp)
REVERT: C  758 MET cc_start: 0.7646 (tpp) cc_final: 0.7378 (tpp)
REVERT: D  758 MET cc_start: 0.7441 (tpp) cc_final: 0.7200 (tpp)
  outliers start: 0
  outliers final: 0
  residues processed: 339
  average time/residue: 0.6407
  time to fit residues: 370.3689
Evaluate side-chains
  313 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 313
  time to evaluate  : 4.169 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 214 optimal weight:   10.0000
   chunk 345 optimal weight:    0.9980
   chunk 211 optimal weight:    0.9980
   chunk 164 optimal weight:    0.4980
   chunk 240 optimal weight:    5.9990
   chunk 362 optimal weight:    8.9990
   chunk 333 optimal weight:    0.6980
   chunk 288 optimal weight:   10.0000
   chunk 29 optimal weight:    0.6980
   chunk 223 optimal weight:    4.9990
   chunk 177 optimal weight:    5.9990
   overall best weight:    0.7780

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

Flipped N/Q/H residues before XYZ refinement:
A 792 ASN
** D 845 HIS ** both conformations clash, **PLEASE CHECK MANUALLY**

Total number of N/Q/H flips: 1

-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7123
moved from start:          0.4899

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.002   0.044  24692  Z= 0.148
  Angle     :  0.475   6.710  33968  Z= 0.262
  Chirality :  0.036   0.176   4176
  Planarity :  0.003   0.038   4356
  Dihedral  :  3.733  17.899   3792
  Min Nonbonded Distance : 2.241

Molprobity Statistics.
  All-atom Clashscore : 8.46
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  4.88 %
    Favored  : 95.01 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.42 %
    Favored  : 99.58 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.66 (0.14), residues: 3588
  helix:  2.34 (0.11), residues: 2396
  sheet:  0.08 (0.40), residues: 176
  loop : -1.90 (0.17), residues: 1016

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.009   0.001   TRP C 898 
 HIS   0.006   0.001   HIS A 845 
 PHE   0.024   0.001   PHE A 477 
 TYR   0.014   0.001   TYR D 999 
 ARG   0.004   0.000   ARG A 998 

********************** REFINEMENT MACRO_CYCLE 10 OF 10 ************************

-------------------------------------------------------------------------------
Update Rama plot phi/psi targets (oldfield only)
************************************************

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Re-set Ramachandran plot restraints
***********************************
  favored: oldfield
  allowed: oldfield
  outlier: oldfield

  7176 Ramachandran restraints generated.
    3588 Oldfield, 0 Emsley, 3588 emsley8k and 0 Phi/Psi/2.
-------------------------------------------------------------------------------
Optimize residue side-chains
****************************
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Residue LEU   41 is missing expected H atoms. Skipping.
Residue VAL   42 is missing expected H atoms. Skipping.
Residue ILE   45 is missing expected H atoms. Skipping.
Residue LYS   50 is missing expected H atoms. Skipping.
Residue LYS  116 is missing expected H atoms. Skipping.
Residue TYR  117 is missing expected H atoms. Skipping.
Residue LEU  118 is missing expected H atoms. Skipping.
Residue LEU  120 is missing expected H atoms. Skipping.
Residue THR  124 is missing expected H atoms. Skipping.
Residue SER  126 is missing expected H atoms. Skipping.
Residue THR  128 is missing expected H atoms. Skipping.
Residue LEU  129 is missing expected H atoms. Skipping.
Residue TYR  130 is missing expected H atoms. Skipping.
Residue LEU  132 is missing expected H atoms. Skipping.
Residue LEU  133 is missing expected H atoms. Skipping.
Residue THR  134 is missing expected H atoms. Skipping.
Residue LEU  139 is missing expected H atoms. Skipping.
Residue LYS  140 is missing expected H atoms. Skipping.
Residue LEU  144 is missing expected H atoms. Skipping.
Residue ILE  146 is missing expected H atoms. Skipping.
Residue SER  147 is missing expected H atoms. Skipping.
Residue VAL  148 is missing expected H atoms. Skipping.
Residue MET  161 is missing expected H atoms. Skipping.
Residue ILE  164 is missing expected H atoms. Skipping.
Residue LEU  168 is missing expected H atoms. Skipping.
Residue ILE  171 is missing expected H atoms. Skipping.
Residue SER  174 is missing expected H atoms. Skipping.
Residue ILE  179 is missing expected H atoms. Skipping.
Residue THR  181 is missing expected H atoms. Skipping.
Residue THR  184 is missing expected H atoms. Skipping.
Residue TYR  186 is missing expected H atoms. Skipping.
Residue LEU  188 is missing expected H atoms. Skipping.
Residue MET  189 is missing expected H atoms. Skipping.
Residue LYS  190 is missing expected H atoms. Skipping.
Residue VAL  196 is missing expected H atoms. Skipping.
Residue THR  200 is missing expected H atoms. Skipping.
Residue ILE  201 is missing expected H atoms. Skipping.
Residue ILE  214 is missing expected H atoms. Skipping.
Residue MET  219 is missing expected H atoms. Skipping.
Residue VAL  220 is missing expected H atoms. Skipping.
Residue SER  221 is missing expected H atoms. Skipping.
Residue THR  225 is missing expected H atoms. Skipping.
Residue SER  237 is missing expected H atoms. Skipping.
Residue TYR  240 is missing expected H atoms. Skipping.
Residue ILE  241 is missing expected H atoms. Skipping.
Residue MET  242 is missing expected H atoms. Skipping.
Residue LEU  250 is missing expected H atoms. Skipping.
Residue TYR  251 is missing expected H atoms. Skipping.
Residue LEU  261 is missing expected H atoms. Skipping.
Residue LEU  262 is missing expected H atoms. Skipping.
Residue VAL  263 is missing expected H atoms. Skipping.
Residue THR  272 is missing expected H atoms. Skipping.
Residue VAL  273 is missing expected H atoms. Skipping.
Residue LYS  276 is missing expected H atoms. Skipping.
Residue LEU  277 is missing expected H atoms. Skipping.
Residue LEU  281 is missing expected H atoms. Skipping.
Residue LYS  283 is missing expected H atoms. Skipping.
Residue LYS  298 is missing expected H atoms. Skipping.
Residue LYS  314 is missing expected H atoms. Skipping.
Residue LYS  321 is missing expected H atoms. Skipping.
Residue LYS  323 is missing expected H atoms. Skipping.
Residue VAL  327 is missing expected H atoms. Skipping.
Residue VAL  329 is missing expected H atoms. Skipping.
Residue SER  332 is missing expected H atoms. Skipping.
Residue SER  341 is missing expected H atoms. Skipping.
Residue LEU  342 is missing expected H atoms. Skipping.
Residue VAL  343 is missing expected H atoms. Skipping.
Residue SER  351 is missing expected H atoms. Skipping.
Residue SER  352 is missing expected H atoms. Skipping.
Residue MET  353 is missing expected H atoms. Skipping.
Residue VAL  354 is missing expected H atoms. Skipping.
Residue LYS  355 is missing expected H atoms. Skipping.
Residue LYS  357 is missing expected H atoms. Skipping.
Residue LEU  358 is missing expected H atoms. Skipping.
Residue VAL  359 is missing expected H atoms. Skipping.
Residue LEU  362 is missing expected H atoms. Skipping.
Residue THR  365 is missing expected H atoms. Skipping.
Residue VAL  366 is missing expected H atoms. Skipping.
Residue SER  367 is missing expected H atoms. Skipping.
Residue LEU  369 is missing expected H atoms. Skipping.
Residue ILE  374 is missing expected H atoms. Skipping.
Residue SER  376 is missing expected H atoms. Skipping.
Residue ILE  378 is missing expected H atoms. Skipping.
Residue LYS  382 is missing expected H atoms. Skipping.
Residue ILE  384 is missing expected H atoms. Skipping.
Residue LEU  385 is missing expected H atoms. Skipping.
Residue SER  387 is missing expected H atoms. Skipping.
Residue SER  388 is missing expected H atoms. Skipping.
Residue LEU  390 is missing expected H atoms. Skipping.
Residue LEU  391 is missing expected H atoms. Skipping.
Residue THR  392 is missing expected H atoms. Skipping.
Residue VAL  393 is missing expected H atoms. Skipping.
Residue ILE  394 is missing expected H atoms. Skipping.
Residue LYS  395 is missing expected H atoms. Skipping.
Residue MET  396 is missing expected H atoms. Skipping.
Residue TYR  410 is missing expected H atoms. Skipping.
Residue LEU  412 is missing expected H atoms. Skipping.
Residue LYS  414 is missing expected H atoms. Skipping.
Residue THR  418 is missing expected H atoms. Skipping.
Residue LYS  423 is missing expected H atoms. Skipping.
Residue LEU  432 is missing expected H atoms. Skipping.
Residue LEU  433 is missing expected H atoms. Skipping.
Residue LEU  439 is missing expected H atoms. Skipping.
Residue LEU  441 is missing expected H atoms. Skipping.
Residue THR  448 is missing expected H atoms. Skipping.
Residue SER  455 is missing expected H atoms. Skipping.
Residue LEU  458 is missing expected H atoms. Skipping.
Residue VAL  461 is missing expected H atoms. Skipping.
Residue MET  462 is missing expected H atoms. Skipping.
Residue ILE  467 is missing expected H atoms. Skipping.
Residue LYS  468 is missing expected H atoms. Skipping.
Residue LYS  472 is missing expected H atoms. Skipping.
Residue VAL  474 is missing expected H atoms. Skipping.
Residue LEU  482 is missing expected H atoms. Skipping.
Residue LEU  484 is missing expected H atoms. Skipping.
Residue LYS  486 is missing expected H atoms. Skipping.
Residue LEU  488 is missing expected H atoms. Skipping.
Residue THR  489 is missing expected H atoms. Skipping.
Residue VAL  492 is missing expected H atoms. Skipping.
Residue LEU  493 is missing expected H atoms. Skipping.
Residue THR  494 is missing expected H atoms. Skipping.
Residue LEU  496 is missing expected H atoms. Skipping.
Residue SER  498 is missing expected H atoms. Skipping.
Residue THR  499 is missing expected H atoms. Skipping.
Residue SER  502 is missing expected H atoms. Skipping.
Residue THR  503 is missing expected H atoms. Skipping.
Residue LEU  504 is missing expected H atoms. Skipping.
Residue VAL  505 is missing expected H atoms. Skipping.
Residue LEU  509 is missing expected H atoms. Skipping.
Residue ILE  511 is missing expected H atoms. Skipping.
Residue LYS  513 is missing expected H atoms. Skipping.
Residue SER  515 is missing expected H atoms. Skipping.
Residue TYR  516 is missing expected H atoms. Skipping.
Residue LEU  520 is missing expected H atoms. Skipping.
Residue LEU  521 is missing expected H atoms. Skipping.
Residue THR  522 is missing expected H atoms. Skipping.
Residue VAL  524 is missing expected H atoms. Skipping.
Residue LYS  526 is missing expected H atoms. Skipping.
Residue LEU  527 is missing expected H atoms. Skipping.
Residue VAL  528 is missing expected H atoms. Skipping.
Residue THR  557 is missing expected H atoms. Skipping.
Residue LEU  561 is missing expected H atoms. Skipping.
Residue ILE  569 is missing expected H atoms. Skipping.
Residue LYS  585 is missing expected H atoms. Skipping.
Residue LEU  598 is missing expected H atoms. Skipping.
Residue LYS  599 is missing expected H atoms. Skipping.
Residue LYS  605 is missing expected H atoms. Skipping.
Residue LEU  639 is missing expected H atoms. Skipping.
Residue LEU  643 is missing expected H atoms. Skipping.
Residue THR  664 is missing expected H atoms. Skipping.
Residue THR  690 is missing expected H atoms. Skipping.
Residue LYS  691 is missing expected H atoms. Skipping.
Residue ILE  695 is missing expected H atoms. Skipping.
Residue LEU  704 is missing expected H atoms. Skipping.
Residue VAL  705 is missing expected H atoms. Skipping.
Residue LYS  714 is missing expected H atoms. Skipping.
Residue LEU  724 is missing expected H atoms. Skipping.
Residue TYR  726 is missing expected H atoms. Skipping.
Residue SER  739 is missing expected H atoms. Skipping.
Residue VAL  763 is missing expected H atoms. Skipping.
Residue LEU  817 is missing expected H atoms. Skipping.
Residue SER  819 is missing expected H atoms. Skipping.
Residue SER  820 is missing expected H atoms. Skipping.
Residue LYS  822 is missing expected H atoms. Skipping.
Residue MET  863 is missing expected H atoms. Skipping.
Residue LEU  864 is missing expected H atoms. Skipping.
Residue SER  917 is missing expected H atoms. Skipping.
Residue SER  921 is missing expected H atoms. Skipping.
Residue THR  922 is missing expected H atoms. Skipping.
Residue THR  923 is missing expected H atoms. Skipping.
Residue THR  930 is missing expected H atoms. Skipping.
Residue LYS  937 is missing expected H atoms. Skipping.
Residue LEU  939 is missing expected H atoms. Skipping.
Residue LEU  943 is missing expected H atoms. Skipping.
Residue LEU  948 is missing expected H atoms. Skipping.
Residue LEU  965 is missing expected H atoms. Skipping.
Residue ILE  985 is missing expected H atoms. Skipping.
Residue ILE 1011 is missing expected H atoms. Skipping.
Residue VAL 1016 is missing expected H atoms. Skipping.
Residue VAL 1017 is missing expected H atoms. Skipping.
Residue TYR 1020 is missing expected H atoms. Skipping.
Residue TYR 1022 is missing expected H atoms. Skipping.
Residue MET 1023 is missing expected H atoms. Skipping.
Residue VAL 1024 is missing expected H atoms. Skipping.
Residue VAL 1025 is missing expected H atoms. Skipping.
Residue LYS 1026 is missing expected H atoms. Skipping.
Residue LYS 1027 is missing expected H atoms. Skipping.
Residue VAL 1058 is missing expected H atoms. Skipping.
Residue MET 1059 is missing expected H atoms. Skipping.
Residue LYS 1060 is missing expected H atoms. Skipping.
Residue VAL 1065 is missing expected H atoms. Skipping.
Residue LYS 1066 is missing expected H atoms. Skipping.
Residue ILE 1067 is missing expected H atoms. Skipping.
Residue THR 1069 is missing expected H atoms. Skipping.
Residue LYS 1070 is missing expected H atoms. Skipping.
Residue SER 1075 is missing expected H atoms. Skipping.
Residue LEU 1085 is missing expected H atoms. Skipping.
Residue SER 1087 is missing expected H atoms. Skipping.
Residue LYS 1088 is missing expected H atoms. Skipping.
Residue LEU 1089 is missing expected H atoms. Skipping.
Residue LEU 1092 is missing expected H atoms. Skipping.
Residue LYS 1093 is missing expected H atoms. Skipping.
Residue LEU 1095 is missing expected H atoms. Skipping.
Residue LEU 1096 is missing expected H atoms. Skipping.
Residue LYS 1097 is missing expected H atoms. Skipping.
Residue ILE 1099 is missing expected H atoms. Skipping.
Residue ILE 1103 is missing expected H atoms. Skipping.
Evaluate side-chains
  349 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 349
  time to evaluate  : 3.754 
Fit side-chains
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
   revert: symmetry clash
REVERT: A  758 MET cc_start: 0.7493 (tpp) cc_final: 0.7230 (tpp)
REVERT: A  788 MET cc_start: 0.8971 (mmm) cc_final: 0.8715 (mtt)
REVERT: A  964 MET cc_start: 0.8281 (mmm) cc_final: 0.8057 (tpp)
REVERT: A 1064 LEU cc_start: 0.8936 (mt) cc_final: 0.8631 (mt)
REVERT: B 1064 LEU cc_start: 0.8937 (mt) cc_final: 0.8658 (mt)
REVERT: C 1064 LEU cc_start: 0.8938 (mt) cc_final: 0.8654 (mt)
REVERT: D  758 MET cc_start: 0.7457 (tpp) cc_final: 0.7173 (tpp)
REVERT: D 1064 LEU cc_start: 0.8937 (mt) cc_final: 0.8654 (mt)
  outliers start: 0
  outliers final: 0
  residues processed: 349
  average time/residue: 0.6172
  time to fit residues: 366.4149
Evaluate side-chains
  318 residues out of total 3300 (non-[ALA,GLY,PRO]) need to be fit.
    rotamer outliers: 0
    poor density    : 318
  time to evaluate  : 3.827 
-------------------------------------------------------------------------------
Set rotamer restraints
**********************
Rotamers are restrained with sigma=1.00
-------------------------------------------------------------------------------
XYZ refinement
**************
Weight determination summary:
   number of chunks: 364
   random chunks:
   chunk 229 optimal weight:    0.8980
   chunk 307 optimal weight:    7.9990
   chunk 88 optimal weight:    7.9990
   chunk 266 optimal weight:    2.9990
   chunk 42 optimal weight:    2.9990
   chunk 80 optimal weight:    3.9990
   chunk 289 optimal weight:    8.9990
   chunk 121 optimal weight:    6.9990
   chunk 296 optimal weight:    0.9990
   chunk 36 optimal weight:   10.0000
   chunk 53 optimal weight:    9.9990
   overall best weight:    2.3788

-------------------------------------------------------------------------------
NQH flips
*********
Analyzing N/Q/H residues for possible flip corrections...

No N/Q/H corrections needed this macrocycle
-------------------------------------------------------------------------------
ADP refinement
**************
|-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------|
| r_work = 0.4025 r_free = 0.4025 target = 0.117161 restraints weight = None  |
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 1; iterations = 47)----------------|
| r_work = 0.3716 r_free = 0.3716 target = 0.099881 restraints weight = 289793.576|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 2; iterations = 39)----------------|
| r_work = 0.3775 r_free = 0.3775 target = 0.103163 restraints weight = 144409.935|
|-----------------------------------------------------------------------------|
|-group b-factor refinement (macro cycle = 3; iterations = 31)----------------|
| r_work = 0.3813 r_free = 0.3813 target = 0.105275 restraints weight = 88675.902|
|-----------------------------------------------------------------------------|
r_work (final): 0.3797
-------------------------------------------------------------------------------
Occupancy refinement
********************
-------------------------------------------------------------------------------
Overall statistics
******************
model-to-map fit, CC_mask: 0.7144
moved from start:          0.4993

Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2
Deviations from Ideal Values - rmsd, rmsZ for bonds and angles.
  Bond      :  0.003   0.035  24692  Z= 0.178
  Angle     :  0.479   6.935  33968  Z= 0.269
  Chirality :  0.035   0.134   4176
  Planarity :  0.003   0.038   4356
  Dihedral  :  3.694  17.507   3792
  Min Nonbonded Distance : 2.233

Molprobity Statistics.
  All-atom Clashscore : 8.44
  Ramachandran Plot:
    Outliers :  0.11 %
    Allowed  :  6.13 %
    Favored  : 93.76 %
  Rotamer:
    Outliers :  0.00 %
    Allowed  :  0.30 %
    Favored  : 99.70 %
  Cbeta Deviations :  0.00 %
  Peptide Plane:
    Cis-proline     : 0.00 %
    Cis-general     : 0.00 %
    Twisted Proline : 0.00 %
    Twisted General : 0.00 %

Rama-Z (Ramachandran plot Z-score):
Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2.
Scores for whole/helix/sheet/loop are scaled independently;
therefore, the values are not related in a simple manner.
  whole:  1.66 (0.14), residues: 3588
  helix:  2.35 (0.11), residues: 2392
  sheet:  0.14 (0.40), residues: 176
  loop : -1.92 (0.18), residues: 1020

Max deviation from planes:
   Type  MaxDev  MeanDev LineInFile
 TRP   0.008   0.001   TRP C 898 
 HIS   0.007   0.001   HIS C 845 
 PHE   0.016   0.001   PHE A1082 
 TYR   0.014   0.001   TYR A 999 
 ARG   0.005   0.001   ARG B 998 
Origin is already at (0, 0, 0), no shifts will be applied

===============================================================================
Job complete
usr+sys time: 7875.03 seconds
wall clock time: 143 minutes 0.89 seconds (8580.89 seconds total)