Statistics: Creating restraints_manager  failed.

/net/cci-nas-00/data/ceres_data/9ik9_60651/06_2025/9ik9_60651.cif /net/cci-nas-00/data/ceres_data/9ik9_60651/06_2025/9ik9_60651.map 3.37
Traceback (most recent call last):
  File "/net/marbles/raid1/dorothee/rerefine/cryoem/rerefine_script.py", line 391, in get_statistics
    checked_model.process(make_restraints=True)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/model/model.py", line 1995, in process
    allow_missing_symmetry = True)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/utils/__init__.py", line 286, in process_pdb_files
    allow_missing_symmetry   = allow_missing_symmetry)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/utils/__init__.py", line 357, in _process_pdb_file
    substitute_non_crystallographic_unit_cell_if_necessary=allow_missing_symmetry)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 5998, in __init__
    restraints_loading_flags=restraints_loading_flags)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 3777, in __init__
    log=log,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 2964, in __init__
    angle_proxy_registry=geometry_proxy_registries.angle)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 1719, in add_angle_proxies
    special_position_dict=special_position_dict).counters
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 2174, in __init__
    registry_process_result=registry_process_result)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 2004, in evaluate_registry_process_result
    i_seqs)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5710/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 1981, in special_dispensation
    for afs in [m_i.pdb_atoms, m_j.pdb_atoms]:
AttributeError: 'NoneType' object has no attribute 'pdb_atoms'