Statistics: Creating restraints_manager  failed.

/net/cci-nas-00/data/ceres_data/9ik9_60651/08_2026/9ik9_60651.cif /net/cci-nas-00/data/ceres_data/9ik9_60651/08_2026/9ik9_60651.map 3.37
Traceback (most recent call last):
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/CERES/rerefine_script.py", line 391, in get_statistics
    checked_model.process(make_restraints=True)
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/model/model.py", line 2252, in process
    self._processed_pdb_file, _ = processed_pdb_files_srv.process_pdb_files(
                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/utils/__init__.py", line 279, in process_pdb_files
    return self._process_pdb_file(
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/utils/__init__.py", line 344, in _process_pdb_file
    processed_pdb_file = monomer_library.pdb_interpretation.process(
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/monomer_library/pdb_interpretation.py", line 6167, in __init__
    self.all_chain_proxies = build_all_chain_proxies(
                             ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/monomer_library/pdb_interpretation.py", line 3893, in __init__
    chain_proxies = build_chain_proxies(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/monomer_library/pdb_interpretation.py", line 3102, in __init__
    mm.add_angle_proxies(
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/monomer_library/pdb_interpretation.py", line 1742, in add_angle_proxies
    self.angle_counters = add_angle_proxies(
                          ^^^^^^^^^^^^^^^^^^
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/monomer_library/pdb_interpretation.py", line 2238, in __init__
    evaluate_registry_process_result(
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/Phenix-2.2rc3-6140/lib/python3.11/site-packages/mmtbx/monomer_library/pdb_interpretation.py", line 2056, in evaluate_registry_process_result
    raise Sorry(outl)
Sorry: Conflicting angle restraints:
  1. definition from: residue: 4J2%NH3
  2. definition from: residue: 4J2%NH3
  atoms:
    "HETATM16900  H   4J2 F   1 .*.     H  "
    "HETATM16885  N   4J2 F   1 .*.     N  "
    "HETATM16886  CA  4J2 F   1 .*.     C  "