Statistics: Creating restraints_manager  failed.

/net/cci-nas-00/data/ceres_data/9r6p_53680/08_2025/9r6p_53680.cif /net/cci-nas-00/data/ceres_data/9r6p_53680/08_2025/9r6p_53680.map 3.1
Traceback (most recent call last):
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/CERES/rerefine_script.py", line 391, in get_statistics
    checked_model.process(make_restraints=True)
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/phenix-2.0-5787/lib/python3.9/site-packages/mmtbx/model/model.py", line 2039, in process
    self._processed_pdb_file, _ = processed_pdb_files_srv.process_pdb_files(
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/phenix-2.0-5787/lib/python3.9/site-packages/mmtbx/utils/__init__.py", line 279, in process_pdb_files
    return self._process_pdb_file(
  File "/net/cci-filer3/home/dcliebschner/04_cryoem/phenix-2.0-5787/lib/python3.9/site-packages/mmtbx/utils/__init__.py", line 370, in _process_pdb_file
    raise Sorry(msg)
Sorry: Fatal problems interpreting model file:
  Number of atoms with unknown nonbonded energy type symbols: 63
    Please edit the model file to resolve the problems and/or supply a
    CIF file with matching restraint definitions, along with
    apply_cif_modification and apply_cif_link parameter definitions
    if necessary.