Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y52	38928	2025-03-12	2024-01-31	2.9	4.04	2.89	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.009	1.05	1.0	0.05	12.81	0.01	1.720	32.51	2.73	2.0	98.0	0.0	-1.00	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	8Y52	38928	2025-01-14	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.008	0.99	1.0	0.05	12.83	0.01	1.843	31.23	1.98	2.2	97.8	0.0	-0.90	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	8Y52	38928	2024-12-28	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.007	0.99	1.0	0.05	13.08	0.01	2.197	28.92	2.48	2.6	97.4	0.0	-0.75	3.24	0.67	0.83	1.66	7380	931	5	0	1	0	0	logfile
✔	8Y52	38928	2024-11-14	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.007	0.99	1.0	0.05	13.08	0.01	2.197	28.92	2.48	2.6	97.4	0.0	-0.75	3.24	0.67	0.83	1.66	7380	931	5	0	1	0	0	logfile
✔	8Y52	38928	2024-09-24	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.007	0.99	1.0	0.05	13.08	0.01	2.197	28.92	2.48	2.6	97.4	0.0	-0.75	3.24	0.67	0.83	1.66	7380	931	5	0	1	0	0	logfile
✔	8Y52	38928	2025-02-12	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.008	0.99	1.0	0.05	12.83	0.01	1.843	31.23	1.98	2.2	97.8	0.0	-0.90	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✘	8VV0	43546	2024-12-30	2024-01-30	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13250	1580	15	0	30	0	0	logfile
✘	8VV0	43546	2025-01-19	2024-01-30	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13250	1580	15	0	30	0	0	logfile
✔	8VUZ	43545	2025-01-14	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.74	0.0	0.04	17.48	0.00	2.468	11.07	4.61	6.3	93.7	0.0	0.15	0.95	0.75	0.84	1.41	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-07-19	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.71	0.0	0.04	17.50	0.00	2.080	14.58	6.85	7.0	92.9	0.1	0.04	0.40	0.78	0.85	1.79	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-06-25	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.71	0.0	0.04	17.50	0.00	2.080	14.58	6.85	7.0	92.9	0.1	0.04	0.40	0.78	0.85	1.79	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2025-03-11	2024-01-30	3.95	4.14	3.94	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.73	0.0	0.04	17.49	0.00	2.475	10.46	4.35	5.8	94.2	0.0	0.23	0.95	0.75	0.84	1.62	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2025-02-11	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.74	0.0	0.04	17.48	0.00	2.468	11.07	4.61	6.3	93.7	0.0	0.15	0.95	0.75	0.84	1.41	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-11-14	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.75	0.0	0.05	17.61	0.00	2.476	10.84	5.01	6.1	93.9	0.0	0.13	0.44	0.77	0.84	1.75	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-12-27	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.75	0.0	0.05	17.61	0.00	2.476	10.84	5.01	6.1	93.9	0.0	0.13	0.44	0.77	0.84	1.75	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-10-10	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.75	0.0	0.05	17.61	0.00	2.476	10.84	5.01	6.1	93.9	0.0	0.13	0.44	0.77	0.84	1.75	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-09-24	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.75	0.0	0.05	17.61	0.00	2.476	10.84	5.01	6.1	93.9	0.0	0.13	0.44	0.77	0.84	1.75	6626	869	4	0	0	0	0	logfile
✔	8VUZ	43545	2024-08-03	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.75	0.0	0.05	17.61	0.00	2.476	10.84	5.01	6.1	93.9	0.0	0.13	0.44	0.77	0.84	1.75	6626	869	4	0	0	0	0	logfile
✔	8VVC	43550	2024-12-30	2024-01-30	4.32	4.77	4.36	4.4	0.003	0.75	0.0	0.05	14.07	0.00	2.196	13.22	0.25	7.7	92.2	0.1	-0.65	0.60	0.80	—	4.4	0.003	0.75	0.0	0.04	14.16	0.00	2.322	12.72	0.08	6.9	93.0	0.1	-0.33	0.87	0.60	0.81	—	10989	1390	1	0	0	0	0	logfile
✔	8VVC	43550	2025-01-18	2024-01-30	4.32	4.77	4.36	4.4	0.003	0.75	0.0	0.05	14.07	0.00	2.196	13.22	0.25	7.7	92.2	0.1	-0.65	0.60	0.80	—	4.4	0.003	0.73	0.0	0.04	14.10	0.00	2.336	11.73	0.00	6.5	93.4	0.1	0.02	0.52	0.60	0.81	—	10989	1390	1	0	0	0	0	logfile

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