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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9BCN | 44431 | 2025-02-11 | 2024-04-09 | 2.9 | 3.16 | 2.99 | 3.2 | 0.006 | 0.81 | 2.0 | 0.06 | 15.34 | 0.01 | 2.156 | 3.80 | 0.96 | 3.7 | 96.3 | 0.0 | -0.99 | 0.72 | 0.85 | 4.67 | 3.2 | 0.002 | 0.64 | 0.0 | 0.04 | 15.76 | 0.00 | 2.570 | 3.03 | 1.28 | 1.9 | 98.1 | 0.0 | 0.76 | 1.14 | 0.68 | 0.83 | 3.62 | 6606 | 850 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 9BCR | 44435 | 2025-05-13 | 2024-04-09 | 3.26 | 3.89 | 3.27 | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 17.05 | 0.01 | 2.168 | 9.53 | 1.42 | 5.3 | 94.6 | 0.1 | 0.18 | 0.78 | 0.85 | 2.01 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 16.96 | 0.00 | 2.500 | 7.85 | 3.20 | 5.0 | 95.0 | 0.0 | 0.62 | 1.60 | 0.76 | 0.85 | 2.39 | 10595 | 1368 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BCN | 44431 | 2024-12-27 | 2024-04-09 | 2.9 | 3.16 | 2.99 | 3.2 | 0.006 | 0.81 | 2.0 | 0.06 | 15.34 | 0.01 | 2.156 | 3.80 | 0.96 | 3.7 | 96.3 | 0.0 | -0.99 | 0.72 | 0.85 | 4.67 | 3.2 | 0.004 | 0.71 | 0.0 | 0.05 | 15.89 | 0.00 | 2.489 | 2.95 | 1.61 | 2.8 | 97.2 | 0.0 | 0.57 | 1.13 | 0.69 | 0.85 | 3.67 | 6606 | 850 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 9BCN | 44431 | 2025-03-11 | 2024-04-09 | 2.9 | 3.16 | 2.98 | 3.2 | 0.006 | 0.81 | 2.0 | 0.06 | 15.34 | 0.01 | 2.156 | 3.80 | 0.96 | 3.7 | 96.3 | 0.0 | -0.99 | 0.72 | 0.85 | 4.67 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.92 | 0.00 | 2.518 | 3.34 | 1.77 | 2.4 | 97.6 | 0.0 | 0.58 | 1.13 | 0.69 | 0.85 | 3.67 | 6606 | 850 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 9BCN | 44431 | 2025-04-27 | 2024-04-09 | 2.9 | 3.16 | 2.98 | 3.2 | 0.006 | 0.95 | 2.0 | 0.06 | 15.34 | 0.01 | 2.156 | 3.80 | 0.96 | 3.7 | 96.3 | 0.0 | -0.99 | 0.72 | 0.85 | 4.67 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 15.92 | 0.00 | 2.535 | 3.18 | 1.93 | 2.2 | 97.8 | 0.0 | 0.61 | 1.13 | 0.68 | 0.84 | 3.53 | 6606 | 850 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 8Z0A | 39700 | 2025-05-20 | 2024-04-09 | 2.84 | 3.13 | 2.97 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 13.59 | 0.00 | 2.236 | 7.90 | 0.00 | 2.7 | 97.3 | 0.0 | 0.56 | 0.73 | 0.82 | 3.15 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 15.92 | 0.00 | 2.583 | 6.30 | 1.19 | 2.3 | 97.7 | 0.0 | 1.10 | 0.91 | 0.73 | 0.86 | 2.96 | 20668 | 2544 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BCN | 44431 | 2025-05-10 | 2024-04-09 | 2.9 | 3.16 | 2.98 | 3.2 | 0.006 | 0.95 | 2.0 | 0.06 | 15.34 | 0.01 | 2.156 | 3.80 | 0.96 | 3.7 | 96.3 | 0.0 | -0.99 | 0.72 | 0.85 | 4.67 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 15.79 | 0.00 | 2.540 | 3.57 | 1.28 | 2.0 | 98.0 | 0.0 | 0.73 | 1.14 | 0.70 | 0.85 | 3.48 | 6606 | 850 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 9BCL | 44429 | 2025-01-14 | 2024-04-09 | 2.9 | 3.20 | 3.03 | 3.2 | 0.005 | 0.76 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 14.95 | 0.00 | 2.486 | 3.49 | 1.24 | 2.2 | 97.8 | 0.0 | 0.43 | 0.36 | 0.70 | 0.85 | 3.51 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8Z0F | 39703 | 2024-10-14 | 2024-04-09 | 3.27 | 3.50 | 3.29 | 3.5 | 0.007 | 1.07 | 0.0 | 0.04 | 19.33 | 0.00 | 1.980 | 12.96 | 0.51 | 10.9 | 89.1 | 0.0 | -2.49 | 0.59 | 0.75 | 0.86 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 19.04 | 0.00 | 2.257 | 8.55 | 5.03 | 10.0 | 90.0 | 0.0 | -2.22 | 0.30 | 0.61 | 0.76 | 0.72 | 18066 | 1098 | 3 | 0 | 2 | 0 | 9062 | logfile |
✔ | 8Z0F | 39703 | 2024-11-19 | 2024-04-09 | 3.27 | 3.50 | 3.29 | 3.5 | 0.007 | 1.07 | 0.0 | 0.04 | 19.33 | 0.00 | 1.980 | 12.96 | 0.51 | 10.9 | 89.1 | 0.0 | -2.49 | 0.59 | 0.75 | 0.86 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 19.04 | 0.00 | 2.257 | 8.55 | 5.03 | 10.0 | 90.0 | 0.0 | -2.22 | 0.30 | 0.61 | 0.76 | 0.72 | 18066 | 1098 | 3 | 0 | 2 | 0 | 9062 | logfile |
✔ | 8Z0F | 39703 | 2025-05-19 | 2024-04-09 | 3.27 | 3.50 | 3.30 | 3.5 | 0.010 | 1.07 | 0.0 | 0.04 | 19.33 | 0.00 | 1.980 | 12.96 | 0.51 | 10.9 | 89.1 | 0.0 | -2.49 | 0.59 | 0.75 | 0.86 | 3.5 | 0.004 | 0.84 | 0.0 | 0.04 | 18.99 | 0.00 | 1.979 | 9.60 | 5.54 | 10.6 | 89.4 | 0.0 | -2.20 | 0.31 | 0.61 | 0.76 | 0.80 | 18066 | 1098 | 3 | 0 | 2 | 0 | 9062 | logfile |
✔ | 8Z0F | 39703 | 2025-01-22 | 2024-04-09 | 3.27 | 3.50 | 3.29 | 3.5 | 0.007 | 1.07 | 0.0 | 0.04 | 19.33 | 0.00 | 1.980 | 12.96 | 0.51 | 10.9 | 89.1 | 0.0 | -2.49 | 0.59 | 0.75 | 0.86 | 3.5 | 0.004 | 0.82 | 0.0 | 0.04 | 19.00 | 0.00 | 2.038 | 9.54 | 5.54 | 11.1 | 88.9 | 0.0 | -2.21 | 0.31 | 0.61 | 0.76 | 0.75 | 18066 | 1098 | 3 | 0 | 2 | 0 | 9062 | logfile |
✔ | 9BCL | 44429 | 2024-12-27 | 2024-04-09 | 2.9 | 3.20 | 3.03 | 3.2 | 0.005 | 0.76 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 14.95 | 0.00 | 2.531 | 4.25 | 1.08 | 2.5 | 97.5 | 0.0 | 0.54 | 0.38 | 0.69 | 0.85 | 3.62 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 9BCL | 44429 | 2025-05-10 | 2024-04-09 | 2.9 | 3.20 | 3.02 | 3.2 | 0.005 | 0.84 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.005 | 0.76 | 0.0 | 0.05 | 15.01 | 0.00 | 2.478 | 3.95 | 1.24 | 2.7 | 97.3 | 0.0 | 0.10 | 0.35 | 0.70 | 0.86 | 3.96 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 9BCL | 44429 | 2025-04-27 | 2024-04-09 | 2.9 | 3.20 | 3.02 | 3.2 | 0.005 | 0.84 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.01 | 0.00 | 2.507 | 3.72 | 1.39 | 2.1 | 97.9 | 0.0 | 0.18 | 0.36 | 0.70 | 0.85 | 3.77 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 9BCL | 44429 | 2025-03-11 | 2024-04-09 | 2.9 | 3.20 | 3.02 | 3.2 | 0.005 | 0.76 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 14.99 | 0.00 | 2.536 | 3.87 | 1.24 | 1.9 | 98.1 | 0.0 | 0.22 | 0.36 | 0.70 | 0.85 | 3.60 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 9BCL | 44429 | 2025-02-11 | 2024-04-09 | 2.9 | 3.20 | 3.03 | 3.2 | 0.005 | 0.76 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 14.95 | 0.00 | 2.486 | 3.49 | 1.24 | 2.2 | 97.8 | 0.0 | 0.43 | 0.36 | 0.70 | 0.85 | 3.51 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8Z0F | 39703 | 2024-09-28 | 2024-04-09 | 3.27 | 3.50 | 3.29 | 3.5 | 0.007 | 1.07 | 0.0 | 0.04 | 19.33 | 0.00 | 1.980 | 12.96 | 0.51 | 10.9 | 89.1 | 0.0 | -2.49 | 0.59 | 0.75 | 0.86 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 19.04 | 0.00 | 2.257 | 8.55 | 5.03 | 10.0 | 90.0 | 0.0 | -2.22 | 0.30 | 0.61 | 0.76 | 0.72 | 18066 | 1098 | 3 | 0 | 2 | 0 | 9062 | logfile |
✔ | 9EXS | 50048 | 2024-12-31 | 2024-04-08 | 3.28 | 4.23 | 3.43 | 3.9 | 0.012 | 1.63 | 0.0 | 0.09 | 12.22 | 0.02 | 1.879 | 0.00 | 0.37 | 2.1 | 97.9 | 0.0 | 0.19 | 0.83 | 0.76 | 3.45 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 13.48 | 0.00 | 2.099 | 2.93 | 0.37 | 1.6 | 98.4 | 0.0 | 2.32 | 0.75 | 0.82 | 0.79 | 2.77 | 15691 | 1004 | 3 | 0 | 1 | 0 | 7675 | logfile |
✔ | 9BC7 | 44426 | 2024-09-27 | 2024-04-08 | 3.3 | 2.73 | 3.21 | 3.4 | 0.015 | 1.83 | 0.0 | 0.10 | 14.65 | 0.01 | 2.210 | 3.53 | 0.55 | 2.2 | 97.8 | 0.0 | -1.65 | 0.52 | 0.66 | 4.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 16.74 | 0.00 | 2.514 | 5.35 | 1.45 | 3.6 | 96.4 | 0.0 | 1.88 | 0.66 | 0.63 | 0.77 | 2.94 | 15628 | 2024 | 8 | 0 | 16 | 0 | 0 | logfile |