Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y2Q	38863	2025-02-10	2024-01-27	2.8	2.79	2.51	2.8	0.006	0.61	0.0	0.05	10.80	0.00	2.276	6.21	0.00	5.7	94.3	0.0	-2.99	0.45	0.84	7.18	2.8	0.004	0.57	0.0	0.05	14.30	0.00	2.606	4.21	6.31	5.0	95.0	0.0	-1.77	0.29	0.45	0.85	7.85	2214	330	6	0	0	0	0	logfile
✔	8Y2Q	38863	2025-03-05	2024-01-27	2.8	2.79	2.51	2.8	0.006	0.61	0.0	0.05	10.80	0.00	2.276	6.21	0.00	5.7	94.3	0.0	-2.99	0.45	0.84	7.18	2.8	0.004	0.55	0.0	0.05	14.30	0.00	2.607	4.43	6.31	5.0	95.0	0.0	-1.78	0.29	0.45	0.85	7.85	2214	330	6	0	0	0	0	logfile
✔	8Y2N	38858	2024-12-28	2024-01-26	3.19	3.51	3.24	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.61	0.0	0.04	16.98	0.00	2.333	7.56	4.07	5.2	94.6	0.2	0.71	1.25	0.59	0.78	2.47	7714	896	8	0	8	0	0	logfile
✔	8Y2N	38858	2025-03-12	2024-01-26	3.19	3.51	3.23	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.61	0.0	0.04	17.12	0.00	2.333	7.43	3.21	4.5	95.3	0.2	0.75	2.25	0.60	0.78	2.60	7714	896	8	0	8	0	0	logfile
✔	8Y2N	38858	2025-02-12	2024-01-26	3.19	3.51	3.24	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.62	0.0	0.04	17.08	0.00	2.335	7.50	3.46	5.0	94.8	0.2	0.67	2.24	0.59	0.78	2.53	7714	896	8	0	8	0	0	logfile
✔	8Y2N	38858	2025-01-15	2024-01-26	3.19	3.51	3.24	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.62	0.0	0.04	17.08	0.00	2.335	7.50	3.46	5.0	94.8	0.2	0.67	2.24	0.59	0.78	2.53	7714	896	8	0	8	0	0	logfile
✘	8VTB	43522	2024-10-12	2024-01-26	2.5	3.12	2.49	2.9	0.007	0.92	0.0	0.05	17.21	0.01	2.221	6.86	0.59	1.8	98.2	0.0	1.65	0.74	0.85	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13392	1600	8	0	28	0	0	logfile
✔	8VTi	43523	2025-01-14	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.0	0.003	0.73	0.0	0.04	15.65	0.00	2.494	9.23	4.33	5.8	94.2	0.0	-0.75	2.89	0.69	0.77	1.30	4667	596	6	0	4	0	0	logfile
✘	8VTB	43522	2024-12-30	2024-01-26	2.5	3.12	2.49	2.9	0.007	0.92	0.0	0.05	17.21	0.01	2.221	6.86	0.59	1.8	98.2	0.0	1.65	0.74	0.85	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13392	1600	8	0	28	0	0	logfile
✔	8VTB	43522	2025-01-19	2024-01-26	2.5	3.12	2.49	2.9	0.007	0.92	0.0	0.05	17.21	0.01	2.221	6.86	0.59	1.8	98.2	0.0	1.65	0.74	0.85	3.55	2.9	0.004	0.73	0.0	0.04	16.63	0.00	2.490	5.87	2.05	1.6	98.4	0.0	2.53	1.35	0.70	0.82	3.34	13392	1600	8	0	28	0	0	logfile
✘	8VTB	43522	2024-11-17	2024-01-26	2.5	3.12	2.49	2.9	0.007	0.92	0.0	0.05	17.21	0.01	2.221	6.86	0.59	1.8	98.2	0.0	1.65	0.74	0.85	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13392	1600	8	0	28	0	0	logfile
✔	8VTi	43523	2024-12-27	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.1	0.003	0.69	0.0	0.04	15.93	0.00	2.483	10.42	5.12	5.1	94.9	0.0	-1.05	2.88	0.69	0.77	1.82	4667	596	6	0	4	0	0	logfile
✔	8VTi	43523	2025-03-06	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.1	0.003	0.71	0.0	0.04	15.96	0.00	2.468	10.10	4.33	5.1	94.9	0.0	-0.79	2.89	0.69	0.77	1.60	4667	596	6	0	4	0	0	logfile
✔	8VTi	43523	2025-02-11	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.0	0.003	0.73	0.0	0.04	15.65	0.00	2.494	9.23	4.33	5.8	94.2	0.0	-0.75	2.89	0.69	0.77	1.30	4667	596	6	0	4	0	0	logfile
✔	8Y2i	38856	2025-01-15	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.80	0.00	2.551	9.03	2.49	9.3	90.7	0.0	-0.86	1.23	0.66	0.71	1.32	8676	723	4	143	0	0	0	logfile
✔	8Y2i	38856	2025-02-13	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.80	0.00	2.551	9.03	2.49	9.3	90.7	0.0	-0.86	1.23	0.66	0.71	1.32	8676	723	4	143	0	0	0	logfile
✔	8Y2i	38856	2025-03-13	2024-01-26	2.92	3.09	2.92	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.61	0.0	0.03	21.75	0.00	2.551	9.71	2.13	8.8	91.2	0.0	-0.88	1.23	0.66	0.71	1.31	8676	723	4	143	0	0	0	logfile
✔	8Y2i	38856	2024-12-28	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.78	0.00	2.552	8.84	1.95	9.3	90.7	0.0	-0.76	1.23	0.65	0.70	1.38	8676	723	4	143	0	0	0	logfile
✔	8Y2i	38856	2024-11-15	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.78	0.00	2.552	8.84	1.95	9.3	90.7	0.0	-0.76	1.23	0.65	0.70	1.38	8676	723	4	143	0	0	0	logfile
✔	8RT7	19481	2025-01-17	2024-01-25	2.93	4.03	2.97	3.2	0.009	0.75	1.0	0.05	13.72	0.01	2.051	8.94	0.07	2.5	97.5	0.0	-0.67	0.72	0.75	3.20	3.3	0.004	0.76	0.0	0.04	14.90	0.00	2.320	9.02	1.19	2.0	98.0	0.0	0.28	1.24	0.79	0.88	2.52	55802	7184	46	0	0	0	0	logfile

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