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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8ZF7 | 60052 | 2025-03-05 | 2024-05-07 | 3.15 | 2.41 | 2.43 | 2.9 | 0.007 | 0.90 | 1.0 | 0.06 | 12.64 | 0.01 | 2.300 | 9.64 | 0.54 | 6.0 | 94.0 | 0.0 | -0.35 | 0.72 | 0.77 | 2.96 | 2.9 | 0.004 | 0.74 | 0.0 | 0.04 | 14.80 | 0.01 | 2.598 | 5.44 | 0.00 | 4.9 | 95.1 | 0.0 | 1.64 | 0.46 | 0.73 | 0.79 | 1.99 | 2076 | 288 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF6 | 60051 | 2025-03-12 | 2024-05-07 | 2.98 | 2.27 | 2.88 | 2.9 | 0.009 | 0.80 | 3.0 | 0.06 | 12.40 | 0.01 | 2.120 | 8.51 | 0.62 | 4.7 | 95.3 | 0.0 | -0.35 | 0.81 | 0.78 | 3.84 | 2.9 | 0.005 | 0.67 | 0.0 | 0.04 | 15.50 | 0.00 | 2.432 | 6.51 | 2.12 | 3.6 | 96.4 | 0.0 | 0.46 | 1.60 | 0.84 | 0.83 | 3.78 | 8284 | 1129 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF7 | 60052 | 2025-06-04 | 2024-05-07 | 3.15 | 2.41 | 2.43 | 2.9 | 0.007 | 0.90 | 1.0 | 0.06 | 12.64 | 0.01 | 2.300 | 9.64 | 0.54 | 6.0 | 94.0 | 0.0 | -0.35 | 0.72 | 0.77 | 2.96 | 2.9 | 0.004 | 0.74 | 0.0 | 0.04 | 14.80 | 0.01 | 2.598 | 5.44 | 0.00 | 4.9 | 95.1 | 0.0 | 1.64 | 0.46 | 0.73 | 0.79 | 1.99 | 2076 | 288 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF7 | 60052 | 2025-04-26 | 2024-05-07 | 3.15 | 2.41 | 2.43 | 2.9 | 0.007 | 0.90 | 1.0 | 0.06 | 12.64 | 0.01 | 2.300 | 9.64 | 0.54 | 6.0 | 94.0 | 0.0 | -0.35 | 0.72 | 0.77 | 2.96 | 2.9 | 0.004 | 0.74 | 0.0 | 0.04 | 14.80 | 0.01 | 2.598 | 5.44 | 0.00 | 4.9 | 95.1 | 0.0 | 1.64 | 0.46 | 0.73 | 0.79 | 1.99 | 2076 | 288 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF7 | 60052 | 2025-05-09 | 2024-05-07 | 3.15 | 2.41 | 2.43 | 2.9 | 0.007 | 0.90 | 1.0 | 0.06 | 12.64 | 0.01 | 2.300 | 9.64 | 0.54 | 6.0 | 94.0 | 0.0 | -0.35 | 0.72 | 0.77 | 2.96 | 2.9 | 0.005 | 0.79 | 0.0 | 0.04 | 14.70 | 0.01 | 2.599 | 6.42 | 0.00 | 5.3 | 94.7 | 0.0 | 1.41 | 1.15 | 0.73 | 0.80 | 2.30 | 2076 | 288 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF6 | 60051 | 2025-04-29 | 2024-05-07 | 2.98 | 2.27 | 2.88 | 2.9 | 0.009 | 0.80 | 3.0 | 0.06 | 12.40 | 0.01 | 2.120 | 8.51 | 0.62 | 4.7 | 95.3 | 0.0 | -0.35 | 0.81 | 0.78 | 3.84 | 2.9 | 0.004 | 0.65 | 0.0 | 0.04 | 15.66 | 0.00 | 2.433 | 6.32 | 2.25 | 3.5 | 96.5 | 0.0 | 0.54 | 1.59 | 0.84 | 0.83 | 3.76 | 8284 | 1129 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZFC | 60056 | 2025-03-13 | 2024-05-07 | 2.68 | 2.47 | 2.60 | 2.2 | 0.006 | 0.74 | 2.0 | 0.05 | 12.45 | 0.00 | 2.051 | 7.63 | 0.12 | 5.6 | 94.4 | 0.0 | -0.79 | 0.81 | 0.79 | 4.41 | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.50 | 0.00 | 2.402 | 5.57 | 2.61 | 3.9 | 96.1 | 0.0 | 0.23 | 0.40 | 0.84 | 0.86 | 3.40 | 8545 | 1149 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZFC | 60056 | 2025-04-29 | 2024-05-07 | 2.68 | 2.47 | 2.60 | 2.2 | 0.006 | 0.74 | 2.0 | 0.05 | 12.45 | 0.00 | 2.051 | 7.63 | 0.12 | 5.6 | 94.4 | 0.0 | -0.79 | 0.81 | 0.79 | 4.41 | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.50 | 0.00 | 2.402 | 5.57 | 2.61 | 3.9 | 96.1 | 0.0 | 0.23 | 0.40 | 0.84 | 0.86 | 3.40 | 8545 | 1149 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZFC | 60056 | 2025-05-11 | 2024-05-07 | 2.68 | 2.47 | 2.60 | 2.2 | 0.006 | 0.74 | 2.0 | 0.05 | 12.45 | 0.00 | 2.051 | 7.63 | 0.12 | 5.6 | 94.4 | 0.0 | -0.79 | 0.81 | 0.79 | 4.41 | 2.2 | 0.004 | 0.66 | 0.0 | 0.04 | 15.54 | 0.00 | 2.394 | 5.99 | 1.42 | 3.6 | 96.4 | 0.0 | 0.18 | 1.13 | 0.84 | 0.86 | 3.26 | 8545 | 1149 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZFC | 60056 | 2025-06-07 | 2024-05-07 | 2.68 | 2.47 | 2.60 | 2.2 | 0.006 | 0.74 | 2.0 | 0.05 | 12.45 | 0.00 | 2.051 | 7.63 | 0.12 | 5.6 | 94.4 | 0.0 | -0.79 | 0.81 | 0.79 | 4.41 | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.50 | 0.00 | 2.402 | 5.57 | 2.61 | 3.9 | 96.1 | 0.0 | 0.23 | 0.40 | 0.84 | 0.86 | 3.40 | 8545 | 1149 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF6 | 60051 | 2025-06-06 | 2024-05-07 | 2.98 | 2.27 | 2.88 | 2.9 | 0.009 | 0.80 | 3.0 | 0.06 | 12.40 | 0.01 | 2.120 | 8.51 | 0.62 | 4.7 | 95.3 | 0.0 | -0.35 | 0.81 | 0.78 | 3.84 | 2.9 | 0.004 | 0.65 | 0.0 | 0.04 | 15.66 | 0.00 | 2.433 | 6.32 | 2.25 | 3.5 | 96.5 | 0.0 | 0.54 | 1.59 | 0.84 | 0.83 | 3.76 | 8284 | 1129 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZF6 | 60051 | 2025-05-11 | 2024-05-07 | 2.98 | 2.27 | 2.88 | 2.9 | 0.009 | 0.80 | 3.0 | 0.06 | 12.40 | 0.01 | 2.120 | 8.51 | 0.62 | 4.7 | 95.3 | 0.0 | -0.35 | 0.81 | 0.78 | 3.84 | 2.9 | 0.005 | 0.68 | 0.0 | 0.04 | 15.58 | 0.00 | 2.431 | 6.32 | 2.37 | 3.6 | 96.4 | 0.0 | 0.37 | 1.59 | 0.84 | 0.83 | 3.86 | 8284 | 1129 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BPH | 44777 | 2025-06-10 | 2024-05-07 | 3.12 | 3.45 | 3.21 | 3.4 | 0.005 | 0.82 | 0.0 | 0.06 | 19.16 | 0.03 | 2.280 | 5.23 | 3.34 | 3.8 | 96.2 | 0.0 | -1.65 | 0.54 | 0.82 | 2.29 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.83 | 0.00 | 2.319 | 3.21 | 1.99 | 3.4 | 96.6 | 0.0 | 0.30 | 1.43 | 0.59 | 0.88 | 2.54 | 11740 | 1484 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8ZFB | 60055 | 2025-05-09 | 2024-05-07 | 3.78 | 2.07 | 2.33 | 1.8 | 0.005 | 0.98 | 2.0 | 0.07 | 13.25 | 0.01 | 1.786 | 10.45 | 0.52 | 8.2 | 91.8 | 0.0 | 0.06 | 0.57 | 0.55 | 3.32 | 1.4 | 0.003 | 0.65 | 0.0 | 0.04 | 14.74 | 0.01 | 2.626 | 3.40 | 3.11 | 3.2 | 96.8 | 0.0 | 2.37 | 0.39 | 0.62 | 0.60 | 2.45 | 2088 | 286 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZFB | 60055 | 2025-06-04 | 2024-05-07 | 3.78 | 2.07 | 2.33 | 1.8 | 0.005 | 0.98 | 2.0 | 0.07 | 13.25 | 0.01 | 1.786 | 10.45 | 0.52 | 8.2 | 91.8 | 0.0 | 0.06 | 0.57 | 0.55 | 3.32 | 1.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.82 | 0.01 | 2.583 | 3.65 | 2.59 | 4.3 | 95.7 | 0.0 | 2.28 | 0.41 | 0.62 | 0.60 | 2.71 | 2088 | 286 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZFB | 60055 | 2025-04-26 | 2024-05-07 | 3.78 | 2.07 | 2.33 | 1.8 | 0.005 | 0.98 | 2.0 | 0.07 | 13.25 | 0.01 | 1.786 | 10.45 | 0.52 | 8.2 | 91.8 | 0.0 | 0.06 | 0.57 | 0.55 | 3.32 | 1.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.82 | 0.01 | 2.583 | 3.65 | 2.59 | 4.3 | 95.7 | 0.0 | 2.28 | 0.41 | 0.62 | 0.60 | 2.71 | 2088 | 286 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BP6 | 44762 | 2024-09-26 | 2024-05-07 | 3.1 | 3.37 | 3.02 | 3.3 | 0.005 | 0.88 | 0.0 | 0.05 | 16.03 | 0.01 | 1.963 | 3.03 | 0.14 | 2.7 | 97.3 | 0.0 | 0.29 | 0.66 | 0.75 | 3.00 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.08 | 0.00 | 1.926 | 5.58 | 2.75 | 2.2 | 97.8 | 0.0 | 0.64 | 0.67 | 0.74 | 0.83 | 3.09 | 13631 | 1732 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 9BP6 | 44762 | 2024-12-30 | 2024-05-07 | 3.1 | 3.37 | 3.02 | 3.3 | 0.005 | 0.88 | 0.0 | 0.05 | 16.03 | 0.01 | 1.963 | 3.03 | 0.14 | 2.7 | 97.3 | 0.0 | 0.29 | 0.66 | 0.75 | 3.00 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.08 | 0.00 | 1.926 | 5.58 | 2.75 | 2.2 | 97.8 | 0.0 | 0.64 | 0.67 | 0.74 | 0.83 | 3.09 | 13631 | 1732 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 9BP6 | 44762 | 2024-11-17 | 2024-05-07 | 3.1 | 3.37 | 3.02 | 3.3 | 0.005 | 0.88 | 0.0 | 0.05 | 16.03 | 0.01 | 1.963 | 3.03 | 0.14 | 2.7 | 97.3 | 0.0 | 0.29 | 0.66 | 0.75 | 3.00 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.08 | 0.00 | 1.926 | 5.58 | 2.75 | 2.2 | 97.8 | 0.0 | 0.64 | 0.67 | 0.74 | 0.83 | 3.09 | 13631 | 1732 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 9BP6 | 44762 | 2024-10-13 | 2024-05-07 | 3.1 | 3.37 | 3.02 | 3.3 | 0.005 | 0.88 | 0.0 | 0.05 | 16.03 | 0.01 | 1.963 | 3.03 | 0.14 | 2.7 | 97.3 | 0.0 | 0.29 | 0.66 | 0.75 | 3.00 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.08 | 0.00 | 1.926 | 5.58 | 2.75 | 2.2 | 97.8 | 0.0 | 0.64 | 0.67 | 0.74 | 0.83 | 3.09 | 13631 | 1732 | 8 | 0 | 8 | 0 | 0 | logfile |