Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y5U	38953	2025-02-12	2024-02-01	3.04	3.34	3.12	3.4	0.004	0.62	0.0	0.04	13.06	0.01	2.215	8.29	0.12	3.7	96.2	0.1	1.88	0.68	0.85	2.62	3.4	0.003	0.60	0.0	0.04	15.04	0.01	2.325	7.55	1.84	3.1	96.8	0.1	2.02	0.36	0.60	0.85	2.53	7961	1016	4	0	5	0	0	logfile
✔	8Y5U	38953	2025-03-12	2024-02-01	3.04	3.34	3.12	3.4	0.004	0.62	0.0	0.04	13.06	0.01	2.215	8.29	0.12	3.7	96.2	0.1	1.88	0.68	0.85	2.62	3.4	0.003	0.58	0.0	0.04	15.03	0.01	2.344	7.67	1.61	3.3	96.6	0.1	2.16	0.37	0.61	0.86	2.65	7961	1016	4	0	5	0	0	logfile
✔	8Y5X	38955	2025-03-12	2024-02-01	3.25	3.48	3.25	3.5	0.003	0.64	0.0	0.04	12.54	0.01	2.201	8.63	0.00	3.4	96.4	0.2	1.40	0.64	0.83	2.94	3.4	0.004	0.64	0.0	0.04	14.12	0.01	2.199	9.42	1.70	3.9	96.1	0.0	1.98	0.38	0.66	0.86	2.35	8032	1024	4	0	4	0	0	logfile
✔	8Y5X	38955	2025-02-12	2024-02-01	3.25	3.48	3.25	3.5	0.003	0.64	0.0	0.04	12.54	0.01	2.201	8.63	0.00	3.4	96.4	0.2	1.40	0.64	0.83	2.94	3.4	0.004	0.64	0.0	0.04	14.19	0.01	2.189	9.30	1.82	3.9	96.1	0.0	1.91	0.38	0.65	0.85	2.40	8032	1024	4	0	4	0	0	logfile
✔	8Y5U	38953	2025-04-28	2024-02-01	3.04	3.34	3.12	3.4	0.004	0.62	0.0	0.04	13.06	0.01	2.215	8.29	0.12	3.7	96.2	0.1	1.88	0.68	0.85	2.62	3.4	0.003	0.58	0.0	0.04	15.03	0.01	2.344	7.67	1.61	3.3	96.6	0.1	2.16	0.37	0.61	0.86	2.65	7961	1016	4	0	5	0	0	logfile
✔	8Y5X	38955	2025-04-28	2024-02-01	3.25	3.48	3.25	3.5	0.003	0.64	0.0	0.04	12.54	0.01	2.201	8.63	0.00	3.4	96.4	0.2	1.40	0.64	0.83	2.94	3.4	0.004	0.64	0.0	0.04	14.12	0.01	2.199	9.42	1.70	3.9	96.1	0.0	1.98	0.38	0.66	0.86	2.35	8032	1024	4	0	4	0	0	logfile
✔	8RVN	19525	2024-10-12	2024-02-01	3.5	3.62	3.47	3.5	0.004	0.72	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.453	3.72	1.79	3.8	96.2	0.0	-0.11	1.16	0.78	0.85	1.95	11924	1540	8	0	12	0	0	logfile
✔	8RVN	19525	2024-12-30	2024-02-01	3.5	3.62	3.47	3.5	0.004	0.72	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.453	3.72	1.79	3.8	96.2	0.0	-0.11	1.16	0.78	0.85	1.95	11924	1540	8	0	12	0	0	logfile
✔	8RVN	19525	2025-01-18	2024-02-01	3.5	3.62	3.47	3.5	0.004	0.72	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.004	0.60	0.0	0.05	15.08	0.00	2.443	3.39	1.94	4.4	95.6	0.0	-0.20	1.16	0.78	0.85	2.16	11924	1540	8	0	12	0	0	logfile
✔	8RVN	19525	2024-09-26	2024-02-01	3.5	3.62	3.47	3.5	0.004	0.72	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.453	3.72	1.79	3.8	96.2	0.0	-0.11	1.16	0.78	0.85	1.95	11924	1540	8	0	12	0	0	logfile
✔	8RVN	19525	2024-11-16	2024-02-01	3.5	3.62	3.47	3.5	0.004	0.72	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.453	3.72	1.79	3.8	96.2	0.0	-0.11	1.16	0.78	0.85	1.95	11924	1540	8	0	12	0	0	logfile
✔	8Y5Y	38959	2025-04-28	2024-02-01	3.3	3.56	3.32	3.6	0.004	0.68	0.0	0.05	13.07	0.01	2.298	9.39	0.46	4.2	95.2	0.6	-0.04	0.65	0.81	3.00	3.6	0.003	0.77	0.0	0.05	15.24	0.01	2.581	10.82	3.24	4.3	95.3	0.4	0.40	0.52	0.64	0.83	1.76	7918	1012	4	0	2	0	0	logfile
✔	8Y5Y	38959	2025-03-12	2024-02-01	3.3	3.56	3.32	3.6	0.004	0.68	0.0	0.05	13.07	0.01	2.298	9.39	0.46	4.2	95.2	0.6	-0.04	0.65	0.81	3.00	3.6	0.003	0.77	0.0	0.05	15.24	0.01	2.581	10.82	3.24	4.3	95.3	0.4	0.40	0.52	0.64	0.83	1.76	7918	1012	4	0	2	0	0	logfile
✔	8Y5Y	38959	2025-02-12	2024-02-01	3.3	3.56	3.33	3.6	0.004	0.68	0.0	0.05	13.07	0.01	2.298	9.39	0.46	4.2	95.2	0.6	-0.04	0.65	0.81	3.00	3.6	0.003	0.75	0.0	0.05	15.17	0.01	2.598	11.32	3.59	4.0	95.6	0.4	0.38	0.49	0.64	0.84	1.80	7918	1012	4	0	2	0	0	logfile
✔	8Y62	38964	2025-04-28	2024-02-01	3.2	2.90	3.23	3.3	0.006	0.73	0.0	0.05	13.81	0.00	2.202	9.41	0.13	5.0	95.0	0.0	-1.49	0.79	0.84	3.17	3.4	0.003	0.68	0.0	0.04	15.22	0.00	2.538	7.05	2.74	3.2	96.8	0.0	0.08	0.38	0.80	0.85	2.32	8160	1128	6	0	1	0	0	logfile
✔	8Y62	38964	2025-02-12	2024-02-01	3.2	2.90	3.23	3.3	0.006	0.73	0.0	0.05	13.81	0.00	2.202	9.41	0.13	5.0	95.0	0.0	-1.49	0.79	0.84	3.17	3.4	0.003	0.65	0.0	0.04	15.41	0.00	2.491	5.78	2.74	3.2	96.8	0.0	0.09	0.38	0.80	0.85	2.32	8160	1128	6	0	1	0	0	logfile
✔	8Y62	38964	2025-03-12	2024-02-01	3.2	2.90	3.23	3.3	0.006	0.73	0.0	0.05	13.81	0.00	2.202	9.41	0.13	5.0	95.0	0.0	-1.49	0.79	0.84	3.17	3.4	0.003	0.68	0.0	0.04	15.22	0.00	2.538	7.05	2.74	3.2	96.8	0.0	0.08	0.38	0.80	0.85	2.32	8160	1128	6	0	1	0	0	logfile
✔	8Y66	38968	2025-03-05	2024-02-01	3.28	3.92	3.36	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.61	0.0	0.04	16.23	0.00	2.507	7.65	3.65	2.4	97.6	0.0	1.89	0.34	0.47	0.69	1.09	3606	467	2	0	1	0	0	logfile
✔	8Y66	38968	2024-10-09	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.004	0.66	0.0	0.04	16.29	0.00	2.485	7.24	3.65	2.4	97.6	0.0	1.71	0.35	0.47	0.70	1.20	3606	467	2	0	1	0	0	logfile
✔	8Y66	38968	2025-01-13	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.62	0.0	0.04	16.22	0.00	2.507	7.51	4.17	2.4	97.6	0.0	1.82	0.35	0.47	0.70	1.02	3606	467	2	0	1	0	0	logfile

• ← previous
• Page 262 of 4927
• next →