Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VW3	43575	2025-04-29	2024-01-31	3.47	3.56	3.37	3.5	0.002	0.38	0.0	0.03	12.88	0.00	2.141	5.39	0.00	2.0	98.0	0.0	2.82	0.56	0.84	1.74	3.5	0.003	0.54	0.0	0.04	15.56	0.00	2.487	7.90	1.52	3.1	96.9	0.0	2.50	1.63	0.59	0.87	1.85	8856	1104	6	0	0	0	0	logfile
✔	8VVF	43557	2025-03-13	2024-01-31	3.0	2.62	—	3.1	0.003	0.67	0.0	0.05	12.63	0.00	2.229	5.99	0.00	4.7	95.3	0.0	-1.37	0.77	0.75	1.34	3.1	0.005	0.72	0.0	0.04	15.73	0.00	2.323	12.39	3.33	5.3	94.7	0.0	-0.26	0.56	0.79	0.78	1.80	8581	1135	6	0	1	0	0	logfile
✔	8RV2	19522	2024-10-14	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.19	0.00	1.950	7.00	2.36	2.9	97.1	0.0	0.70	0.97	0.78	0.82	1.90	17248	2178	10	0	9	0	0	logfile
✔	8RV2	19522	2024-08-06	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.19	0.00	1.950	7.00	2.36	2.9	97.1	0.0	0.70	0.97	0.78	0.82	1.90	17248	2178	10	0	9	0	0	logfile
✔	8RV2	19522	2024-07-22	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.24	0.00	1.967	9.09	2.74	3.1	96.8	0.0	0.57	0.35	0.78	0.82	1.88	17248	2178	10	0	9	0	0	logfile
✔	8RV2	19522	2025-01-21	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.59	0.0	0.04	17.24	0.00	1.979	7.06	2.36	2.5	97.5	0.0	0.43	1.33	0.78	0.81	1.78	17248	2178	10	0	9	0	0	logfile
✔	8RV2	19522	2024-09-27	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.19	0.00	1.950	7.00	2.36	2.9	97.1	0.0	0.70	0.97	0.78	0.82	1.90	17248	2178	10	0	9	0	0	logfile
✔	8RV2	19522	2024-11-18	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.19	0.00	1.950	7.00	2.36	2.9	97.1	0.0	0.70	0.97	0.78	0.82	1.90	17248	2178	10	0	9	0	0	logfile
✔	8Y5J	38937	2025-01-26	2024-01-31	2.94	4.00	3.10	3.5	0.004	0.62	0.0	0.05	13.62	0.01	2.216	6.70	0.08	6.5	93.2	0.2	-0.78	0.87	0.87	2.60	3.5	0.002	0.59	0.0	0.04	14.78	0.00	2.432	6.00	1.02	6.3	93.5	0.2	-0.63	1.01	0.87	0.87	2.36	24146	3018	10	0	35	0	0	logfile
✔	8VVH	43559	2025-02-12	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.65	0.0	0.04	16.96	0.00	2.525	6.10	5.87	7.3	92.6	0.1	-1.30	0.30	0.69	0.80	1.98	6877	941	4	0	0	0	0	logfile
✔	8VVH	43559	2025-01-15	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.65	0.0	0.04	16.96	0.00	2.525	6.10	5.87	7.3	92.6	0.1	-1.30	0.30	0.69	0.80	1.98	6877	941	4	0	0	0	0	logfile
✔	8VVH	43559	2024-10-10	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.002	0.66	0.0	0.04	17.01	0.00	2.536	6.62	5.14	7.0	92.9	0.1	-1.43	0.31	0.68	0.79	1.89	6877	941	4	0	0	0	0	logfile
✔	8VVH	43559	2025-04-29	2024-01-31	3.95	4.19	3.93	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.66	0.0	0.04	16.93	0.00	2.525	6.93	6.17	7.1	92.8	0.1	-1.43	0.30	0.69	0.79	2.01	6877	941	4	0	0	0	0	logfile
✔	8VVH	43559	2024-09-24	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.002	0.66	0.0	0.04	17.01	0.00	2.536	6.62	5.14	7.0	92.9	0.1	-1.43	0.31	0.68	0.79	1.89	6877	941	4	0	0	0	0	logfile
✔	8Y5H	38935	2025-01-18	2024-01-31	3.1	2.41	3.18	2.1	0.007	0.85	1.0	0.05	14.34	0.01	2.206	8.39	0.52	7.0	93.0	0.0	-1.85	0.79	0.79	3.24	2.1	0.004	0.66	0.0	0.04	16.97	0.01	2.137	5.47	3.02	5.2	94.8	0.0	-0.07	0.44	0.81	0.81	2.03	12405	1562	7	0	1	1	0	logfile
✔	8Y5H	38935	2024-11-16	2024-01-31	3.1	2.41	3.18	2.1	0.007	0.85	1.0	0.05	14.34	0.01	2.206	8.39	0.52	7.0	93.0	0.0	-1.85	0.79	0.79	3.24	2.1	0.004	0.65	0.0	0.04	16.85	0.01	2.413	5.79	3.02	5.0	95.0	0.0	0.12	0.46	0.81	0.81	1.91	12405	1562	7	0	1	1	0	logfile
✔	8VVH	43559	2024-12-28	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.002	0.66	0.0	0.04	17.01	0.00	2.536	6.62	5.14	7.0	92.9	0.1	-1.43	0.31	0.68	0.79	1.89	6877	941	4	0	0	0	0	logfile
✔	8VVH	43559	2024-11-15	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.002	0.66	0.0	0.04	17.01	0.00	2.536	6.62	5.14	7.0	92.9	0.1	-1.43	0.31	0.68	0.79	1.89	6877	941	4	0	0	0	0	logfile
✔	8Y5H	38935	2024-12-30	2024-01-31	3.1	2.41	3.18	2.1	0.007	0.85	1.0	0.05	14.34	0.01	2.206	8.39	0.52	7.0	93.0	0.0	-1.85	0.79	0.79	3.24	2.1	0.004	0.65	0.0	0.04	16.85	0.01	2.413	5.79	3.02	5.0	95.0	0.0	0.12	0.46	0.81	0.81	1.91	12405	1562	7	0	1	1	0	logfile
✔	8VVH	43559	2025-03-12	2024-01-31	3.95	4.19	3.93	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.67	0.0	0.04	16.88	0.00	2.522	6.93	6.17	8.2	91.7	0.1	-1.38	0.30	0.68	0.79	1.94	6877	941	4	0	0	0	0	logfile

• ← previous
• Page 264 of 4927
• next →